Scatter plotting DE values along a contiguous chromosomal x axis
Dear Biostars,
I am trying to make a scatterplot to show my RNA-Seq log2fold values along all the chromosomal positions for the human genome. Something like this:
| *** *** ** * ***
log2fold | * ** *** * *** * *
|________|_*___|___**_|_____|_*__|___|__**| ...
chr1 chr2 chr3 chr4 chr5 chr6 chr7 ...
I was thinking on using the chr1,chr2..etc indexes and then simply plot the two vectors, but I run into the problem of labeling each chromosome with its corresponding size. Any help would be appreciated!!
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