This is a test version of Biostars. For the public version, visit https://www.biostars.org.
seiving out blast results

Hello,

ok now i created a protein database of 15 bacterial pseudomonas strains, i have (5000) proteins which i queried against my database, now i have all these results, is there any way i could get only significant matches per protein(first significant match) in a tabular form for all the 5000 proteins? or how else can i analyse all this data quickly?

blast results retrieving blast results
• 1,428 views • link
updated by Ram Ram • written by samuelksm • samuelksm

That's right, I checked out the links above. Thanks for the feed back. I am having another issue here, have a look at it and see if you can advise me

I have been trying to map and compare gene clusters like this.

< image not found >

I have tried using clc work bench, snap gene, fancy gene but non comes close to that diagram in the link. so I have three newly sequenced strains and I want to compare one cluster against P.sp. f113. any ideas on how to go about this problem or even software. By the way, my scripting is still novice.

• 0 views • link
updated by Ram Ram • written by samuelksm • samuelksm

please make a new question out of this or search first: "How to visualize gene clusters / synteny?"

• 0 views • link
updated by Ram Ram • written by Michael Dondrup Michael Dondrup

0 answers

No answers yet.

Log in to answer this question.

More posts like this