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GenomeStrip testinstall error

I'm trying to run GenomeStrip (v1.04.14), but the install tests fail with many errors. The output is this:

http://jpst.it/weUB

Any clue on what I should look into first?

Thanks!

EDIT: Version 2.0 released yesterday doesn't seem to have this issue

genomestrip software-error
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updated by Ram Ram • written by mikyatope • mikyatope

The entire error log might help better, there is no useful information in this segment.

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written by Ram Ram

1 answer

Looks like you're running it on a node/computer that does not have access to the Internet. If you're using an HPC, try running it from a login node. You might wanna talk to your sysadmin and check if they have special nodes with Internet access.

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written by Ram Ram

Yes, the working nodes have no external connection. It could be difficult to run in a login node. Is internet access really mandatory?

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updated by Ram Ram • written by mikyatope • mikyatope

It would seem so. Contact your sysadmin - they usually have a login node configured for long running tasks that need internet connectivity.

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written by Ram Ram

Indeed it was the internet connection, running in the login node gave no problems at all. May I ask you what gave you the hint that the problem was the connection? Thanks!

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updated by Ram Ram • written by mikyatope • mikyatope 
INFO 11:18:47,849 HttpMethodDirector - I/O exception (java.net.ConnectException) caught when processing request: Network is unreachable
INFO 11:18:47,849 HttpMethodDirector - Retrying request
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updated by Ram Ram • written by marina.v.yurieva marina.v.yurieva

Thanks! Silly question now I see, I was looking only at the ERROR marks

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updated by Ram Ram • written by mikyatope • mikyatope

I had this exact same error a few days back, and that is how I was able to figure it out. Glad I could help! :)

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written by Ram Ram

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