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PAML method for estimation of dN/dS

I am estimating synonymous/non synonymous substitution rate (dN/dS) of gene in primate lineage. Which method of PAML is most appropriate for estimation of dN/dS ratio along each branch of primate lineage.

selection gene lineage
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updated by Ram Ram • written by evo_genomics • evo_genomics

1 answer

codeml branch or branch-site models.

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updated by Ram Ram • written by Brice Sarver Brice Sarver

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