Tool: tools to get coverage of a particular transcript from bedgraph
0
Entering edit mode

i have a bedgraph..

1 0 10540 0
1 10540 10564 4
1 10564 10569 5
1 10569 10590 7
1 10590 10614 3
1 10614 10619 2
1 10619 12045 0

from reads mapped to the genome. now i want to extract a particular transcript
1 925741 944581
from the bedgraph, which would give me only those cordinates and coverage of the transcript provided.

are there any tools to do this job.

i can write perl script to do this, but i have many transcript to find out, please suggest me with a tool, if available.

ADD COMMENTlinkeditmoderate 5.0 years ago manauwer_raza • 0

Login before adding your answer.

Powered by the version 2.0