hello veryone can anyone help me or advise me if there is a way to select any ligand (other than the ones listed on the …

Hello everyone For my project I did many docking with three ligand to proteins via Autodock vina tool. And I got results as output pdbqt …

Hello everyone I am trying do molecular docking almost more than a thousand proteins with a ligand but if I am using autodock vina I …

Hi everyone. I am new here and also newbie in docking study (my major is quite different) Anyone can help me with Ligplot troubleshooting? When …

i am using autodock vina for molecular docking for the host and the ligand interaction. Question 1) Is command prompt the terminal window used for …

I've performed docking with autodock vina, I can see the receptor ligand interaction using GUI of autodock tools but as I have quite a number …

Is **energy minimization** of a ligand and a protein compulsory before performing in silico protein-ligand docking? (I use AutoDock Vina for docking) If yes, Why …

I use autodock vina for docking. My problem is how to validate a docking protocol. I know that I should to compare with native ligand …

I tried to optimize ligands using prodrg. after the completion of energy minimization, I chose DRGFIN.PDB file of ligand, as its having all hydrogens added. …

Hallow every one I am doing my docking with autodock software. Taking protein as receptor and RNA as ligand.. But at the time of running …