Can Trinity (de novo) be coupled to Tophat?

Hello,

I understand that Trinity data can be post-processed with Bowtie and later with RSEM.

Nature protocols 8.8 (2013): 1494-1512.

I would like to know if anybody has processed Trinity assembled fasta file with TopHat or HHSplicer?

Thanks,
GP

alignment assembly

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updated 4.4 years ago by Ram

• written 11.6 years ago by GPR

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