Finding SSR marker in genome scale with comparison
I have 7 different genome sequences (phenotypes) and the specie has reference genome. My goal is finding SSR marker for each phenotype . My questions:
1- Should I map these 7 genomes with ref.genome or not (De novo assembly) for finding SSR?
2- How can i have comparison among 7 genomes SSR markers?
TNX a lot.
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