Entering edit mode
9.2 years ago
biolab
★
1.4k
Hi everyone,
I have a blat mapping result. The modified output format (readID, start, end, chromID, start, end) is as follows:
read1 1 98 chr1 2000 2098 +
... ...
I also have a genome gff file as follows:
chr1 MSU_osa exon 200 400 . + . ID=LOC_Os100
... ...
I would like to produce a mapping-graph. Previously I performed bowtie to generate .bam file that can be further used for mapping-graph production. But here how to deal with the blat output result? Thank you very much!