Thanks. You've saved my day.
Sorry, not sure if they are called newick or nexus tree formats, but it's the common format outputed by PHYML, MrBayes, etc.
MrBayes outputs a tree at the end of the analysis in the terminal and it looks really good, even has support values. Is there any software that can do that?
Adrian
EDIT: Sorry, forgot to mention silly me, I use CentOS.
5 answers
If I understand correctly, you want to view tree as an ASCII art on the command line like this:

You can try Newick utilities that will do this. It seems you can do this in BioPython also.
ETE's get_ascii function provides text-based visualization, allowing also to show internal nodes features.
from ete2 import Tree
t = Tree("((A, B)Internal_1:0.7, (C, D)Internal_2:0.5)root:1.3;", format=1)
t.add_features(size=4)
print t.get_ascii(attributes=["name", "dist", "size"])
#
# /-A, 0.0
# /Internal_1, 0.7
# | \-B, 0.0
# -root, 1.3, 4
# | /-C, 0.0
# \Internal_2, 0.5
# \-D, 0.0
#
Check also the upcoming ETE's command line tools, tree view and other tools will be supported:
http://phylohack.wordpress.com/2014/11/27/about-the-upcoming-ete-command-line-tools/
currently available as beta: https://github.com/jhcepas/ete/releases/tag/latest_beta
UPDATE:
ete3 provides text-based visualization from the command line:
ete3 view --text MyTreeFile.nw
Using dendropy - a python tree manipulating package:
import dendropy
tree = dendropy.Tree.get_from_path('treefile.nwk', 'newick')
print tree.as_ascii_plot()
It can print support values (I didn't have them in my example)
part of my tree (looks better in terminal):
\--+
| /------ 509169
| /------+
| | | /--- 314565
| | \--+
| | \--- 190485
\---+
| /------ 291331
| /---+
| | | /--- 342109
| | \--+
\--+ \--- 360094
|
| /--- 190486
\------+
\--- 316273
I don't think Treeview can show phylogenetic trees in the terminal -- I think it can open a window if prompted. In any event, I think for a tree viewing program, you can't get any better than FigTree. I think the original question was for a tree viewer for the command line. Here's a pretty comprehensive list of tree viewing programs out there: Tree Editors
PAUP* can do this, too. After you run it in terminal:
- >paup> exec <file_containing_nexus_format_of_trees>
- paup> showtrees n
It will show the n-th tree in the file.
If you are looking for a GUI, Dendroscope is a very nice and fast tree visualization software.
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