I would like to identify the ribosome binding site (RBS) for a particular gene within a prokaryotic operon. I have read on various sites that a Perl program, RBS-finder, exists and is now incorporated into the GLIMMER gene prediction tool. However I cannot find a link to the standalone online version of RBS-finder. Can anyone point me in the right direction to this program or another RBS-finder?
Thanks in advance!
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written
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bennuttall •
2 answers
You can use Genome Compiler for that - they have embedded the RBS calculator by Prof. Howard Salis.
I have been looking for the program as well. It is odd that it has almost been completly scrubbed from the internet. I did manage to find the older 1.0 version though.
https://github.com/sgivan/BGA/blob/marvelous/bin/rbs_finder.pl
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