Question about gene ontology annotation: When analysing DE genes do we look for all DE or we separate over and under expression? · Biostar

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Question about gene ontology annotation: When analysing DE genes do we look for all DE or we separate over and under expression?

I started doing gene ontology analysis and a doubt that came out was if I must look for the functional categories for over and under expressed genes separeted or together. I am trying to visuIize in cluego but I dont know if I can use the expression data in the network graph. Someone have some guidance for me ?

gene ontology annotation

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updated 11.7 years ago by Woa

• written 11.7 years ago by tiago211287

1 answer

Check this thread:
"Separate enrichment analysis of pathways for up- and downregulated genes"

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written 11.7 years ago by Woa

Thank you very much. This discussion will help me.

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written 11.7 years ago by tiago211287

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