bed file of gene body fro hg19

Can some one direct me where can I find gene body coordinates as bed file (other format) for Hg19. I want to use it in IGV

gene body hg19

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updated 4.3 years ago by Ram

• written 11.7 years ago by kanwarjag

1 answer

One way via the command line:

$ wget -qO- ftp://ftp.sanger.ac.uk/pub/gencode/release_21/gencode.21.annotation.gtf.gz \
    | gunzip --stdout - \
    | gtf2bed - \
    > gencode.21.bed

• 0 views • link

written 11.7 years ago by Alex Reynolds

Just a clarification: Gencode 21 is GRCh38 :

Gencode 19 supports GRCH37 (~/hg19/) http://www.gencodegenes.org/releases/

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updated 4.3 years ago by Ram

• written 11.5 years ago by Rm

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