Error: Allocate vector size in R - Running in server (not local)
I am running in to this problem of memory allocation (Error: cannot allocate vector of size xxxMb) when try to run R script in a server: R script calculates Pvalue from the output of ProbAbel.
server memory allocation: IBM iDataPlex Linux #1.2.6.32.46-0.3-default LOAD LEVELER 4.1.1.3
# @ resources=ConsumableCpus(1) ConsumableMemory(24gb)
# @ job_type = serial
# @ class = A
R sessioninfo:
R version 2.10.0 (2009-10-26)
x86_64-unknown-linux-gnu
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
Most of the troubleshoots advised here in this page are attributed to local machines
Any help would be great... let me know if you need additional details
Thanks
M
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Your process is running out of memory. Please ask for help on such errors - using the latest version of R and BioC and providing a reproducible example including file sizes - to either BioC or R-help, your R version is 5 years old, you won't receive any helpful comments without using the latest version there either. Hint: difference between local and server is irrelevant here.
Hello muralinmars!
We believe that this post does not fit the main topic of this site.
Out of memory error, not sufficiently documented, nor reproducible, nor specifically related to bioinformatics.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
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