Hi all, I need to map a bunch of fastq files consisting of DNA sequences (paired end reads) against pan-genome proteins. So I need to …

Hi, I am given a genome sequence and am asked to do blast search against the whole nr database and mark/ extract regions (sequences) that …

Hi, I have blast2.5.0+ and have downloaded nr database. Since, blast with the complete nr db will take months for a whole genome, how can …

<p>Is it necessary to preprocess whole genome short reads from NCBI before aligning them against a .gb reference? How if yes?</p>

Dear All, For the fungus I study, transcriptome data were submitted to NCBI by other researchers. Now I want to investigate if some genes are …

Hi All, Suppose, I have a fa file with 1000 DNA fragment (100bp each) from difference species. Now I want to judge the species origin …

Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but …

<p>Can anyone tell me what would be the result if we blast the whole genome against itself?</p> <p>why we do so?</p>

Hi All, I'm new to bioinformatics and interested in determining the bacteria strains in a collection of bacteria genome contigs. I wonder if is logical …

<p>Hi,</p> <p>I am trying to blast certain sequences (in fasta files) against the drosophila genome using the qblast operation provided in BioPython. From the documentations, …