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DNA sequence origin mapping [blast]

Hi All,

Suppose, I have a fa file with 1000 DNA fragment (100bp each) from difference species. Now I want to judge the species origin of each fragment, How should I do?

I tried blast. the blast would give me lots of result for each fragment. but I have 1000 fragment? Can I set blast to show me one result for each fragment? and output these result for 1000 fragment simultaneously?

Max matches in a query range =1?

Max target sequences =1?

Thanks

deconvolution reads mapping species

1 answer

Did you try to blast the sequences?

the blast would give me lots of result for each fragment. but I have 1000 fragment? Can I set blast to show me one result for each fragment? and output these result for 1000 fragment simultaneously?

Yes you can. Read the manual and use google.

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