What does the plots out of nullp and pwf mean?
Hi all,
I am learning goseqand I reached the point to calculate pwf. However it gives a warning and two plots that I have a hard time understanding them. So I have three questions:
1. What does the warning mean?
> gene_pwf=nullp(deGenes, bias.data=new_lengthData)
Warning message:
In pcls(G) : initial point very close to some inequality constraints
2. What does the plot out of nullp means? What shall I interpret from it? It looks very different from the one in manual.
3. What is the plot out of plot(pwf)? The plot's style is very new to me with those DEgenes, bias.data and pwf rectangles and the axis having no titles!!! what is it saying?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Relatedness inference using KING
written by sara.aglantarek •
-
kmer content failling with fastqc
written by slimane.khayi •
-
goseq pwf length bias plot: help interpreting plot
written by mrodrigues.fernanda •
-
goseq: Can't find mm10/geneSymbol length data in genLenDataBase...
written by Bohdan Khomtchouk
-
voom : mean variance trend plot, How to interpret the plot
written by David_emir
-
Sudden quality drop in the middle of HiSeq R1 reads but not in R2?
written by sentausa
-
Why numInCat are different from the number of GOs present in the list it is calculated from?
written by Parham
-
How to equalize two vector lengths?
written by Parham
-
Codes for preparing data for goseq!
written by Parham
-
What are less and greater in fc.kegg.p?
written by Parham
