Trying to locate and characterise SNPs

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9.5 years ago

chrisclarkson100 ▴ 150

In this link, there is a series of manhattan plots showing the association of SNPs within a gene (in this case I'm studying TAF5 on page 3). It is evident that some SNPs within TAF5 show significance, but I cannot find their locations.... the paper is called "Biological Insights into 108 Schizophrenia-associated genetic loci" in Nature and in the supplementary information section there doesn't seem to be any document that details the position of each SNP....

Any tips?

sequencing snp • 1.7k views

ADD COMMENT • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by chrisclarkson100 ▴ 150

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Use the most significant SNPs, plot al LD plot with this or that and you will obtain for all linked SNPs the position. For the other SNPs I see no chance to get the position if there is no information about the rs number.

ADD REPLY • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by Jimbou ▴ 950

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