Automatic layout of SBML file in python
Hi,
I have a Python script where I create an SBML model programmatically. Now I would like to do a crude automatic layout of the model. Does anyone know of a library capable of doing that? I could resolve to PyGraphviz, but I would prefer if there is something already implemented.
Kind regards,
Fredrik
1 answer
I realize this is a super late answer but I only started watching Biostars for constraint based modeling. You could try out https://pstjohn.github.io/d3flux/ for your needs.
• 1 views
•
link
written
by
Moritz E. Beber •
Log in to answer this question.
More posts like this
-
Accessing COSMIC database via Python script
written by maria_giulia_carta •
-
apt-format-result, where is the --annotation-file?
written by barroyo •
-
Summarize gene functions from sprot_top_blast_hit_P
written by biosjm •
-
Designing peptide library
written by skdutta2091 •
-
Python library for parsing bcftools stats file
written by William
-
Programmatic obtention of SBML from a list of proteins
written by martingarridorc •
-
tools for writing edge case BAM Files for testing
written by Ann
-
Open Source Library For Radial Phylogram
written by User 3875 •
-
Metabolic Network Drawing
written by Kwet •
-
Protein Digestion In Python Or Ruby?
written by Paulo Nuin
