Running several NGS HLA typers and cross-checking their calls is best practice, but every typer speaks a different dialect - different file formats, different resolutions …

I am trying to align multi fasta files containing HLA allele sequence data. My goal is to match the MAFFT alignment with the IMGT/HLA database …

Hi, Any idea of a resource that has the various HLA haplotype variant positions (WRT to hg38) in a VCF file? For example, [IPD-IMGT/HLA][1] has …

Hi all! I am looking for HLA gene sequences for a specific cell line (GM12878). Does anyone have any info about where I can find …

Hi everyone, I am searching for a downloadable database of HLA allele frequencies by country (especially European countries). I have found a nice database here …

Hi all, I am trying to obtain the protein sequences of the peptide binding grooves of MHC class I and class II alleles, but am …

I have done HLA typing using exome sequencing data. I have two questions in this regad: (i) Can I discard the extra fields and consider …

I have HLA typed whole genome sequencing data using [HLA-VBSeq][1]. Reads were first aligned to hg19 with BWA-MEM, then reads aligning to all HLA loci …

I am trying to extract only variants which as an ALT allele frequency above a certain value, using vcftools and the parameter `--non-ref-af-any`. Several of …

<p>For human MHC (HLA) alleles there is a ftp download available for the CDS of all HLA alleles at <a href="ftp://ftp.ebi.ac.uk/pub/databases/imgt/mhc/hla/">ftp://ftp.ebi.ac.uk/pub/databases/imgt/mhc/hla/</a> in FASTA.</p> <p>I am …