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Exome Sequencing

Hi,

I will be using Illumina HiSeq 2000 to sequence exomes . I have not received the data yet, and I am looking to put a plan together on the steps for analysis.

Does anyone know what type of files I will be starting with ( the output from the illumine sequencer) and if there is an outline on how to process the files up to the analysis stage.

Thanks

next-gen sequencing exome

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1 answer

What Michael said, I'll just paste it into an answer:

See: What is the best pipeline for human whole exome sequencing?

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