Which Msa Scoring Methods Did You Use?
I would like to ask this 6 month old question (Ab initio unsupervised methods for inferring quality of Multiple Sequence Alignments) in a simple way.
Which MSA scoring methods did you use?
multiple
quality
• 3,068 views
•
link
updated
by
Biostar
380
• |
written
by
Aleksandr Levchuk
322
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to produce multiple sequence alignment figures with phenotypic data?
written by anikcropscience 28Hello, I have several questions regarding multiple sequence alignment (MSA): 1. How can I produce publication-quality MSA figure for 150 samples? At the moment, I …
-
Tutorial: InsideDNA: Improving gene prediction with protein profiles in Augustus for annotation of …
written by shilparaopradeep 19Gene prediction is one of the most common tasks in bioinformatic analysis of newly sequenced genomes. AUGUSTUS is an excellent gene prediction tool which works …
-
Is There Any Guide For Species Tree Reconstruction?
written by Robert Jenkins 12<p>Can anybody summarize the stepwise procedure of reconstructing a species tree involving protein sequences from 6 species? Although I found this <a href='http://biostar.stackexchange.com/questions/1931/phylogenetic-analysis-of-whole-genomes'>Post</a> useful in …
-
Best Way To Preprocess Barcoded Illumina Paired-End Data
written by Ying W 426<p>I know this topic has come up <a href='http://biostar.stackexchange.com/questions/1675/filtering-paired-end-reads'>many</a> <a href='http://biostar.stackexchange.com/questions/8791/paired-end-sequence-preprocessing-effects-on-downstream-processes'>times</a> <a href='http://biostar.stackexchange.com/questions/3081/multiplexed-pair-end-sequences-barcode-sorting'>before</a> but I wanted to get feedback on what people are doing now …
-
Ortholog Detection Tool
written by Gorysko 10<p>Dear all nowadays I want to detect orthologs in wide group of bacteria, and I've choose blast method BRH. I've found quite good topics here …
-
Can Bioinfo Projects Grow On Large Social Networks?
written by Aleksandr Levchuk 322<p>Imagine Facebook going into Bioinformatics - getting hundreds of millions of users collaborating with friends to solve real-world problems. What type of projects can grow …
-
What Is The Largest Collection Of Multiple Alignments?
written by Aleksandr Levchuk 322<p>I am doing research that requires a large collection of Multiple Sequence Alignments.</p> <p>What is the largest downloadable collection?</p> <p>Here is what I have looked …
-
Verifying A Quality Improvement For Multiple Sequence Aligments (Msa)
written by Aleksandr Levchuk 322<h2>Background</h2> <p>Earlier I asked a question on how to measure the <strong>"quality"</strong> of a multiple sequence alignment: <a href="http://biostar.stackexchange.com/questions/3668/ab-initio-methods-for-inferring-quality-of-multiple-sequence-alignments">Ab initio methods for inferring quality of …
-
23Andme Coverage
written by Aleksandr Levchuk 322<p>I would like to use 23andMe to get some raw data out of my genome.</p> <p><a href='http://23andMe.com'>23andMe</a> sends the samples to LabCorp which uses Illumina …
-
Ab Initio Unsupervised Methods For Inferring Quality Of Multiple Sequence Alignments
written by Aleksandr Levchuk 322<p>MSA programs make mistakes. Even if no mistakes are made and output MSA is "optimal", we could still be looking at something Biologically meaningless (e.g. …