Custom SKAT parameters in Rvtests
I'm using Rvtests for association of exome chip genotypes with a quantitative phenotype. The SKAT test runs fine with default parameters, but when I try to change the alpha error and variant weighting parameters like this:
--kernel skat[nPerm=100:alpha=0.001:beta1=1:beta2=20]
I get an error message:
zsh: no matches found: skat[nPerm=100:alpha=0.001:beta1=1:beta2=20]
Any help would be greatly appreciated...
Thanks!
Luca
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Problem solved... The zsh shell had trouble sorting out the []. Switching to bash shell works.
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