Question

PacBio Technology Assemblers

0

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9.5 years ago

midox ▴ 290

Hello,

I need to know the assemblers using PacBio technology like HGAP.

Do you know other friends?

Thank you for your reply

Assembly PacBio long-reads • 3.3k views

ADD COMMENT • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by midox ▴ 290

0

Entering edit mode

Thank you for your reply.

Do you have a reference (article) on the Falcon?

And AHA (A Hybrid Assembler) and ALLORA (A Long Read Assembler)? do they use PacBio technology? do I have references conserant these two assemblers because I did not find it, if you have.

Thank you

ADD REPLY • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by midox ▴ 290

score 2 · Answer 1 · 2016-12-08

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7.4 years ago

Picasa ▴ 640

This topic is 2 years old. I am wondering if there are new softwares nowadays and any benchmark ?

ADD COMMENT • link 7.4 years ago by Picasa ▴ 640

Ram · Answer 2 · 2014-10-07

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9.5 years ago

Biomonika (Noolean) 3.2k

For example Celera and/or Falcon. Note that by default HGAP uses Celera for assembly step.

ADD COMMENT • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by Biomonika (Noolean) 3.2k

Ram · Answer 3 · 2014-10-07

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9.5 years ago

rtliu ★ 2.2k

Large Genome Assembly with PacBio Long Reads

PacBio-only

HGAP
HBAR-DTK
Falcon
PBcR self-correction
Celera® Assembler
Sprai

Hybrid

pacBioToCA
ECTools
Spades
Cerulean

Gap Filling

PBJelly 2

Scaffolding

AHA
PBJelly 2

ADD COMMENT • link updated 2.2 years ago by Ram 43k • written 9.5 years ago by rtliu ★ 2.2k