Long reads Assembly Algorithms

hello,

do you know of assembling long reads algorithms?

thank you for your reply

long-reads assembly-algorithms assembly

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updated 4.8 years ago by Ram

• written 12.2 years ago by midox

do you have other algorithms suggest me?

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written 12.2 years ago by midox

Just a comment: you should reply to an answer using the 'Add Comment' button, not by adding a new answer.

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written 12.2 years ago by Chris Fields

thank you for your reply

yes, but I need long reads assembly algorithms.

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updated 6.6 years ago by Ram

• written 12.2 years ago by midox

2 answers

By long reads, do you mean PacBio reads? Pacific Biosciences has a nice overview of algorithms here: https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads

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written 12.2 years ago by Philipp Bayer

What Philipp said. Also, if you have high-confidence (low error rate) reads like Moleculo you could try using an overlap-graph-based assembler like Celera assembler, Newbler, etc.

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updated 6.6 years ago by Ram

• written 12.2 years ago by Chris Fields

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