This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Application Similar To 'Intersectregions' Of Useq ?

Useq has an application called "IntersectRegions" that can take bed files, intersect them and find out the common binding regions between two datasets.

Is there some other program that can do something similar to this?

Thank you?

intersect bed
• 2,316 views • link
updated by Ram Ram • written by Aditya • Aditya

1 answer

You mean like bedtools?

"The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps"

• 0 views • link
written by User 59 User 59

Well I have a list of bound regions (chr, start, stop) for one protein and another list for another protein. I wish to find the common bound regions for both proteins.

Thanks for letting me know about Bedtools. The Bedtools application "overlap" would probably do this job, right ?

• 0 views • link
written by Aditya • Aditya

Specifically, BEDTools intersectBed should be what you want. It will take 2 bed files as input.

• 0 views • link
written by Swbarnes2 Swbarnes2

Log in to answer this question.

More posts like this