This is a test version of Biostars. For the public version, visit https://www.biostars.org.
PLINK format to EIGENSTRAT format

Hi,

Is there a tool (apart from 'convertf') that can change PLINK output files (e.g. .ped) to EIGENSTRAT format? In this case, the PED file would be converted to a file with one line per SNP and one column per sample, and the range of values would be 0,1,2,9

thanks!

plink eigenstrat
• 12,125 views • link
updated by Ram Ram • written by bsmith030465 bsmith030465

Er, is there some sort of problem you're having with convertf? It's definitely the standard tool for this job.

• 0 views • link
updated by Ram Ram • written by chrchang523 chrchang523

2 answers

It looks like fcGENE is capable of this.

• 0 views • link
updated by Ram Ram • written by chrchang523 chrchang523

Already answered here.

A: Conversion tools for GWAS

• 0 views • link
written by Joey Joey

Log in to answer this question.

More posts like this