Integrated platform analysis of TCGA datasets (Cluster of cluster assignemnts) or COCA subtypes
I am trying to replicate the study as a learning excercise, I am still not able to figure out how did they implement COCA subtypes, Any advice, code, additional readings will be much appreciated.
Hello! I got this confusion regarding the concept and intuition behind normalizing an entire set (having multiple TMT plexes) of experiment which contains both healthy …
Hello, I am trying to visualize CNV with additional information about cell ploidy and phylogenetic tree. I would like to do something like this [Figure …
Hi, I am looking for the known human core transcriptional regulatory networks whose interactions have been experimentally verified. For example, see the Figure 1 of …
I am currently reading a paper that employs machine learning based techniques to predict driver mutations. In this paper, it is written that, this method …
I am attempting to identify convergent and divergent transcription (bidirectional promoters) in several thousand genes that contain a protein TF I am interested in. I …
Hi Everyone, I am a complete beginner here who has landed himself with some metatranscriptomic data from some mice gut samples. All the sequencing was …