How Do I Find Pentamer Motifs In A Given Bed File
Is there any way to scan my own pentamer motif around certain genomic regions with control (that would be some thing like random region of input file) and also significant score of the motif?
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Repineme •
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Do you need approximate ("fuzzy") matches to your motif or exact matches?
exact matches. but if it has any option "fuzzy" that's also good. Are you the BEDtools guys. if you are great work! aaron.