Compare sample RNA-seq data with publicly available micro-array data
Hi there,
I would like to compare the transcriptome of my sample to the transcriptomes of several cell types from a database and select the cell type that my sample resembles most. The problem is, the cell type data is, micro-array data, and the data of my sample is RNAseq data.
Do I need to do a micro-array experiment or can I use my RNAseq data?
Thanks!
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mark.ziemann
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1 answer
This type of data integration meta-analysis has been discussed a few times before.
How To Go About Comparing Rnaseq With Micro Array Expression Data?
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