I'm trying to align 15 genbank files generated by RAST for 15 Mycoplasma genomes that we have assembled. I am aligning the files with progressivemauve with default parameters, and visualizing with MAUVE's GUI. The alignment runs fine, but when I visualize it, I get "(no annotations loaded)" for each genome. I've tried this using a genbank file for a reference Mycoplasma genome and I get the same result.
Has anyone run into the problem before and/or does anyone have any suggestions?
I just deleted the redundant gaps in the LOCUS row, then annotation loading worked!
May I kindly inquire if you could provide additional insights on how you successfully resolved this issue? I'm currently in the process of aligning two chromosomes using GenBank files that contain annotations, and I'm encountering the same challenge. Your assistance would be greatly appreciated. Thank you in advance.