This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Can't compile spats (SHAPE-SEQ analysis pipeline)

I am trying to compile spats on a 64-bit ubuntu machine.

I have boost libraries installed and ./configure does not complain.

However, when the compilation fails with error: 'feof' was not declared in this scope message.

Anybody compiled this package successfully? What am I missing?

shape-seq shape-seq rna rna
• 2,221 views • link
updated by Ram Ram • written by ilya.shamovsky • ilya.shamovsky

1 answer

Looks like somewhere in the source a file is missing cstdio, you may want to write the author about this.

• 0 views • link
written by pld pld

That's what I gathered from googling around but when I add #include <cstdio> to the top of the reads.cpp file I get this in another file: error: invalid conversion from 'const char*' to 'char*' [-fpermissive]

Wrong compilation flag? Sorry, cpp is not really my cup of tea...

• 0 views • link
written by ilya.shamovsky • ilya.shamovsky

I'm not sure, I'd try and contact the authors. I'd like to know if this works, we have an interest in SHAPE.

• 0 views • link
written by pld pld

Log in to answer this question.

More posts like this