Generating .xml file from list of genes using BLAST
Hello,
I need to generate an .xml file from BLAST starting with a list of genes (currently in .txt format).
Do I require a script to do this, or is there an easier way to do this directly on the online BLAST website?
Thank you...
• 2,930 views
•
link
updated
by
Ram
•
written
by
GreenDiamond
•
written
by
GreenDiamond
1 answer
Type blastn -help. Scroll down to outfmt. You can find different formatting options. For XML Blast output, outfmt is 5.
Check the similar Blast - Formatting Output in biostar.
• 2 views
•
link
written
by
Prakki Rama
Log in to answer this question.
More posts like this
-
Retrieving GO mappings for GOseq analysis with non-native organism
written by thomas.welch •
-
extract genes and functions +/-50kb around a SNP
written by biosol
-
GO enrichemnt results Analysis (Volcano plot)
written by mayada_mazher1991 •
-
Online blast using biopython
written by aleksanderczeszyk •
-
pulling out contigs that blast to a non-relevant species from xml files
written by paraskevopou •
-
Generate all NNI-neighbours of a tree
written by phylomat •
-
Unable to view blastn result in blast2GO, Please help
written by anjalinair20 •
-
Need some help regarding format compatible with VEP online tools
written by ivivek_ngs
-
How To Extract Desire Genes Blast Xml Result From A Big Blast Xml File
written by KJ Lim •
-
Trying To Extract Blast Results Into Xml Outfile From Larger Blast Xml File
written by juefish •
