Is it possible to do a multiple sequence alignment for proteins online without downloading software? Or how is it possible to do a protein multiple …

Hello to everyone :) I need to build a HMM profile with hmmer without an MSA, i.e., I have a set of protein sequences that …

Hello I'm trying to run the Multiple Sequence Alignment using biojava and ready code recommended by biojava ``` public class CookbookMSA { public static void …

Hello, I am working with Biojava and I am trying to run CookbookMSA. I have all requested jars, but I get an error ``` Exception …

Is there any method to use in biojava to predict secondary structure from a given sequence? Or if not does any anyone how can i …

I have problems with using method I biojava in class alignments: `getProgressiveAlignment(GuideTree<S,C> tree, Alignments.ProfileProfileAlignerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix)`. I don't know what is `Alignments.ProfileProfileAlignerType` …

I would like to ask if there is possible using biojava add sequence to exiting profile alignement ? I mean I would like to keep …

<p>how to display amino acid ailgnment in biojava using Biojava? I'm using Graphics2D to drew amino acid sequences alignment in my biojava application, but it …

<p>Hi all,</p> <p>this will be my first question here :)</p> <p>i have an alignement file generated using Clustalx (around 20 species)</p> <p>i need to parse …

<p>Hi, is there a VIM file/script out there that would highlight a multiple sequence alignment appropriately, like in clustalx? I think it would be nice …