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Snp.Plotter Input Files

Hi,

Can anyone instruct me on where to save the snp.plotter input files (SNP.FILE, HAP.FILE, GENOTYPE.FILE) so that R can read them? I have created the files but do not know where to save them/which directory to place them in.

Thanks

k_star

r snp
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updated by Lars Juhl Jensen Lars Juhl Jensen • written by K_Star • K_Star

Panic over, figured it out, just had to identify the working directory and place the files there, so used getwd() command in R.

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written by K_Star • K_Star

Hi, Can you please tell me how to create a genotype and hapmap file. I just have a ped file which i used for PLINK .

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written by siddharth.sethi5 siddharth.sethi5

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