Beginner in bioinformatics needs some help
Hi, I am new in Bioinformatics, trying to analyze two colour agilent microarray. I have decided to follow this protocol build the expression matrix step by step from GEO raw data I have created a folder that i have named "Targets.txt". Inside I have created folder "SampleFiles" and downstream three subfolders "Array1", "Array2" and "Array3". I want to read those files and I get a message PErmission denied. I know it is super simple but please can anyone help me.
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Hard to answer, we currently have no idea from which data and from which format you start. CEL files? A matrix with intensity values? Some commands would help that generated this error.
My files are in the format: 8M-8 SG11410002_257236320035_S002_GE2_107_Sep09_2_4 I have 8 files in .txt format per array. 3 arrays in total.
Where are you trying to open this file ? R-studio?
Yep, R Studio.
Right click on R-studio and run it as administrator. Hopefully this should solve the problem.
I solved the problem :) Thank you :)