Hello everyone, today I found myself thinking about something. I'm new to the field of bioinformatics and I'm running some analyses in Kraken2, Bracken, and …

well, when I followed the Readme to install Pfam_scan, **I couldn't find active_site.dat.gz in Pfam's ftp**. In every post I check , it illustrated the …

I tried downloading the following: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/mappings/pdb_pfam_mapping.txt but it's missing a huge number of PFAM ids. For example, `PF13276` isn't in there. Is there another place …

Hi there, Nowadays, I am trying to work on finding the protein domains by using hmmscan (HMMER 3.2.1). So, I have a file that multiple …

Hello guys I have downloaded biogrid​ ppi data and integrate same in a MySQL database. I have also downloaded UniProt and others will be downloaded …

Hello, I have downloaded the local pfam data base from ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release. There are two databases **1) Pfam-A.fasta.gz 2) Pfam-A.full.gz** . The first one consist of …

Hi, I am trying to use MuSic for pfam annotation on **Linux RHEL system**. I already downloaded pfam, cosmic-omim data ([genome-databases_1-1.tar.gz][1]) in my home directory …

<p>Does there exist a public API for retrieving records from Sanger's COSMIC databases? I have a data set which has thousands of samples annotated only …

<p>I'm trying to run MuSiC play but get the following error:</p> <p>ERROR: Error running genome music pfam: Cannot find the pfam db path. at /gnet/resfiles3/resapps/apps/music/0.4.1-1/sles11sp2/lib/perl5/Genome/Model/Tools/Music/Pfam.pm …

<p>Hi all, I am very new both to perl and BioMart. I am stuck with the configuration or the registry file. Can anyone help me …