Hi folks
I was wondering if people had any experience with M-COFFEE.
I'm planning to align thousands of MSAs and was planning to use the output of M-COFFEE to eliminate regions with bad alignment.
Seems like M-COFFEE outputs either a html or clustalw format and I was wondering if there was any good way to filter for example sequences with scores less then 80?
Thanks for reading!
1 answer
Seems like I'm answering my own question but for people who would want to know in the future it seems like you can use the same method as T-COFFEE to filter the results.
http://www.tcoffee.org/Documentation/t_coffee/t_coffee_tutorial.htm#_Toc235985476
http://www.tcoffee.org/Documentation/t_coffee/t_coffee_tutorial.htm#_Toc235985573
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