Hi, I have a bipartite network of transcription factors and genes. I used network analyzer in Cytoscape and got a very low density for the …

<p>I have the task of clustering ~ 18K plant proteins, with the ultimate goal of inferring gene gain and loss - this necessitating inference of …

<p>Hey guys,</p> <p>I&#39;m currently working on my final project for college and it&#39;s about finding SNPs. So the basic idea is to implement a method …

<p>Hi all,</p> <p>I have a very simple but massively frustrating problem. I am interested in just getting all of the lengths (number of amino acid …

<p>I have a fasta nt file containing about 2000 bacterial/archeal entries, and I&#39;d like to use something like glimmer to do the gene calling inside …

<p>Hi,<br /> <br /> I need to retrieve the list of TCGA glioblastoma samples that were classified as G-CIMP (<a href="http://www.sciencedirect.com/science/article/pii/S153561081000108X">Noushmehr et al., 2010</a>).<br /> …

<p>I would like to plot the coverage of a genomic region of interest. I&#39;m working with RNA-seq data and my objective is to show an …

<p>Hey all :]</p> <p>I use samtools&#39;s depth, and occasionally samtool&#39;s pileup commands to calculate coverage of my reads to the genome before binning for coverage. …

<p>Hello all,</p> <p>I am working on finding SNPs in a small number of highly similar Pseudomonas genomes. I&#39;ve used freebayes to call variants with something …

<p>Details of my dataset: Phospho-proteomics data generated from MS LTQ Thermo Finigan. Sample are from 2 groups: control v/s disease model of heart. The samples …