Python workflow/pipeline repository?
Is there a repository of Python workflows/pipelines? For example, Taverna workflows can be found at the myExperiment website. Is there anything similar for pure Python based workflows/pipelines? Even systems that use Python only for a glue language would be useful. (My actual interest is in seeing how Python scripts are used to control external tools.)
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You might take a look at snakemake and the snakemake workflow repository:
https://bitbucket.org/johanneskoester/snakemake-workflows/src
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https://bcbio-nextgen.readthedocs.org/en/latest/
There are also python based workflow engines: snakemake, ruffus and others.
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Blacktie for RNA-seq
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