This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Allen Institute RNAseq data normalization

Hi

Recently, I've got the RNAseq data from Brainspan (Allen institute; http://brainspan.org/). Just wondering whether this dataset was normalized for GC contents and batch-effect. I can't find that information on their document.

rna-seq brainspan normalization

1 answer

I think you just haven't seen the documentation? Take a look here:

http://help.brain-map.org/download/attachments/3506181/Transcriptome_Profiling.pdf?version=1&modificationDate=1382036562736

Log in to answer this question.