Extend a contig using NGS library
Hi
Is there a tool I can use to extend a specific contig using a library of NGS data (it is PE library)?
Thank you
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Rayan Chikhi
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drtamermansour •
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drtamermansour •
2 answers
I'd use SSPACE together with GapFiller (made by the same group). SSPACE scaffolds similar contigs using PE data, GapFiller then tries to fill the gaps in between.
Here's SeqAnswers' thread about SSPACE, and here's the SeqAnswers thread about GapFiller.
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Ram
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Philipp Bayer
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Philipp Bayer
There's Mapsembler2 that can help you extend / visualize the neighborhood of a single contig, even if you have no other contigs.
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Rayan Chikhi
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