Sample clustering based on gene expression

Hi,

Having 90 RNA-seq samples and 250 top deferentially expressed genes, what is the most popular method/tool/package to cluster the samples using the DE genes?

Thanks.

cluster gene expression

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updated 12.3 years ago by Irsan

• written 12.3 years ago by sarahmanderni

1 answer

Base functionality of R (look at hclust() and dist() methods) and the dendroextras to manipulate and plot the resulting dendrogram easily.

• 1 views • link

written 12.3 years ago by Irsan

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