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andrew.j.skelton73 ♦ 5.7k
Role: Moderator
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Handle: @andrew.j.skelton739912
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Joined: 9 months ago
Twitter: ajskelton73
Last seen: 7 months ago
Location: London

about me

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185
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C: EnhancedVulcano Package Inputing Data Format
0 Votes | 0 Replies
10 months ago
andrew.j.skelton73 5.7k
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1.2k
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C: Infinium Methylation SNP
0 Votes | 0 Replies
10 months ago
andrew.j.skelton73 5.7k
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1
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1.7k
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C: DNA methylation analysis with RnBeads: start analysis from Beta-values
1 Vote | 1 Reply
11 months ago
andrew.j.skelton73 5.7k
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1
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394
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C: MSTRGs are plaguing my RNA-Seq analysis
0 Votes | 1 Reply
12 months ago
andrew.j.skelton73 5.7k
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6.3k
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C: retrieve normalised count data from DESeq2
0 Votes | 0 Replies
13 months ago
andrew.j.skelton73 5.7k
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358
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A: Extracting this data frame from a .vcf file
1 Vote | 0 Replies
13 months ago
andrew.j.skelton73 5.7k
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1.7k
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A: GATK ASEReadCounter: Downstream analysis for identifying allele specific express
0 Votes | 0 Replies
14 months ago
andrew.j.skelton73 5.7k
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1
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3.9k
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C: normalization with DEseq2
4 Votes | 1 Reply
4.5 years ago
andrew.j.skelton73 5.7k • updated 14 months ago
RamRS 21k
2
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1
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436
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A: batch effect in RNAseq analysis using topcoat cufflinks pipeline
2 Votes | 1 Reply
14 months ago
andrew.j.skelton73 5.7k
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436
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C: batch effect in RNAseq analysis using tophat cufflinks pipeline
1 Vote | 0 Replies
14 months ago
andrew.j.skelton73 5.7k
4
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2
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394
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A: MSTRGs are plaguing my RNA-Seq analysis
4 Votes | 2 Replies
14 months ago
andrew.j.skelton73 5.7k
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436
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C: batch effect in RNAseq analysis using topcoat cufflinks pipeline
0 Votes | 0 Replies
14 months ago
andrew.j.skelton73 5.7k
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346
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C: get calls in R
1 Vote | 0 Replies
15 months ago
andrew.j.skelton73 5.7k
1
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1
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457
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C: ATYPICAL VOLCANO PLOT RNA SEQ
1 Vote | 1 Reply
17 months ago
andrew.j.skelton73 5.7k
2
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3
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549
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A: eQTL analysis considering P-values
2 Votes | 3 Replies
17 months ago
andrew.j.skelton73 5.7k
2
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1
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1.1k
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C: Automation of R package loading
2 Votes | 1 Reply
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
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1
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1.2k
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A: Linkage analysis with whole -exome sequencing data
1 Vote | 1 Reply
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
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419
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C: WGCNA Co-expression network analysis on cuffdiff output
0 Votes | 0 Replies
18 months ago
andrew.j.skelton73 5.7k
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830
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A: Recommendations for bacterial data integration and/or System Biology
1 Vote | 0 Replies
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
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419
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C: WGCNA Co-expression network analysis on cuffdiff output
0 Votes | 0 Replies
18 months ago
andrew.j.skelton73 5.7k
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500
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C: transcription expression matrix for DESEQ2
0 Votes | 0 Replies
18 months ago
andrew.j.skelton73 5.7k
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849
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A: defining function of list of genes
1 Vote | 0 Replies
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
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1.1k
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C: Remove rows based on duplicates in one column
0 Votes | 0 Replies
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
1
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748
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A: rna seq analysis
1 Vote | 0 Replies
4.1 years ago
andrew.j.skelton73 5.7k • updated 18 months ago
RamRS 21k
7
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1
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569
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A: Is it possible to make a PCA plot for samples using TPM exprssion values in R?
7 Votes | 1 Reply
18 months ago
andrew.j.skelton73 5.7k
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1
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500
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A: transcription expression matrix for DESEQ2
1 Vote | 1 Reply
18 months ago
andrew.j.skelton73 5.7k
1
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1
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500
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C: transcription expression matrix for DESEQ2
1 Vote | 1 Reply
18 months ago
andrew.j.skelton73 5.7k
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1
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751
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C: WGCNA-consensus network analysis using RNA-seq data
0 Votes | 1 Reply
18 months ago
andrew.j.skelton73 5.7k
2
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1
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751
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A: WGCNA-consensus network analysis using RNA-seq data
2 Votes | 1 Reply
18 months ago
andrew.j.skelton73 5.7k
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380
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C: Error while doing EdgeR fro miRNA Seq analysis
0 Votes | 0 Replies
19 months ago
andrew.j.skelton73 5.7k
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395
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C: Lead Bioinformatician at Kew Gardens, Richmond UK
0 Votes | 0 Replies
19 months ago
andrew.j.skelton73 5.7k
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2
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776
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C: Problem for getting P-Value in Module-Trait Relationship in WGCNA
0 Votes | 2 Replies
19 months ago
andrew.j.skelton73 5.7k
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1
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1.4k
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C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
0 Votes | 1 Reply
19 months ago
andrew.j.skelton73 5.7k
2
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652
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C: What is the difference between HaplotypeCaller and UnifiedGenotyper?
2 Votes | 0 Replies
19 months ago
andrew.j.skelton73 5.7k
2
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1
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1.4k
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A: RNA-seq experimental design for SNP calling
2 Votes | 1 Reply
19 months ago
andrew.j.skelton73 5.7k
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1
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804
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C: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
0 Votes | 1 Reply
19 months ago
andrew.j.skelton73 5.7k
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569
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C: qvalues are the same, thus yielding insignificant results
1 Vote | 0 Replies
20 months ago
andrew.j.skelton73 5.7k
1
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1
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569
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C: qvalues are the same, thus yielding insignificant results
1 Vote | 1 Reply
20 months ago
andrew.j.skelton73 5.7k
1
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1
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569
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A: qvalues are the same, thus yielding insignificant results
1 Vote | 1 Reply
20 months ago
andrew.j.skelton73 5.7k
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1
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578
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C: Cutadapt installation - user defined directory
0 Votes | 1 Reply
20 months ago
andrew.j.skelton73 5.7k
1
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6
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2.6k
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Illumina HumanOmniExpress IDAT files
1 Vote | 6 Replies
illumina idat
4.7 years ago
andrew.j.skelton73 5.7k • updated 20 months ago
freeseek • 40
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1
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629
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C: why Dseq2 does not care about the condition?
0 Votes | 1 Reply
21 months ago
andrew.j.skelton73 5.7k • updated 21 months ago
RamRS 21k
3
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1
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629
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A: why Dseq2 does not care about the condition?
3 Votes | 1 Reply
21 months ago
andrew.j.skelton73 5.7k
2
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1.1k
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A: Installing MultiQC on Ubuntu
2 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
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747
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C: Create a File format to store Variant
0 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
9
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2
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747
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C: Create a File format to store Variant
9 Votes | 2 Replies
21 months ago
andrew.j.skelton73 5.7k
3
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0
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759
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A: Programming interview via Skype
3 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
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342
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C: RNA BULK SEG ANALYSIS
0 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
4
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1
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980
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A: edger model matrix design of linear model
4 Votes | 1 Reply
21 months ago
andrew.j.skelton73 5.7k
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980
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C: edger model matrix design of linear model
0 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
4
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636
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C: gtf sos sos!!!
4 Votes | 0 Replies
21 months ago
andrew.j.skelton73 5.7k
5
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1
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654
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A: Does BWA mem ever edit data
5 Votes | 1 Reply
21 months ago
andrew.j.skelton73 5.7k
1
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0
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542
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C: Relative transcript expression
1 Vote | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
2
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1
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1.2k
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A: EPIC array annotation
2 Votes | 1 Reply
22 months ago
andrew.j.skelton73 5.7k
2
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1
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579
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A: How to filter for samples that show good concordance across replicates in DESEQ2
2 Votes | 1 Reply
22 months ago
andrew.j.skelton73 5.7k
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270
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A: question for Accession No. : SSR
0 Votes | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
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328
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A: Question regarding Bioinformatics with R and large comparisons
0 Votes | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
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0
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608
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C: stringTie Warning message
0 Votes | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
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739
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A: CNV calling using ExomeDepth
0 Votes | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
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0
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1.2k
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C: Linkage analysis with whole -exome sequencing data
0 Votes | 0 Replies
22 months ago
andrew.j.skelton73 5.7k
2
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0
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4.6k
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A: Some explanation about what a paired-end sequencing really means
2 Votes | 0 Replies
23 months ago
andrew.j.skelton73 5.7k
1
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1
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798
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C: retrospective trio analysis from WGS SNPs
1 Vote | 1 Reply
23 months ago
andrew.j.skelton73 5.7k
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575
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A: Removing batch effects between Affymetrix and Agilent platforms using ComBat
0 Votes | 0 Replies
23 months ago
andrew.j.skelton73 5.7k
1
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1
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825
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C: Surrogate variable analysis: ask for a practical example
1 Vote | 1 Reply
23 months ago
andrew.j.skelton73 5.7k
4
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2
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825
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A: Surrogate variable analysis: ask for a practical example
4 Votes | 2 Replies
23 months ago
andrew.j.skelton73 5.7k
1
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636
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C: Deseq2 batch effect design issue
1 Vote | 0 Replies
23 months ago
andrew.j.skelton73 5.7k
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1
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636
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C: Deseq2 batch effect design issue
0 Votes | 1 Reply
23 months ago
andrew.j.skelton73 5.7k
1
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0
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636
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C: Deseq2 batch effect design issue
1 Vote | 0 Replies
23 months ago
andrew.j.skelton73 5.7k
7
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2
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812
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A: What are the requirements to use data generated in other microarray experiments
7 Votes | 2 Replies
23 months ago
andrew.j.skelton73 5.7k
2
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360
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A: Transcription Factor Network
2 Votes | 0 Replies
23 months ago
andrew.j.skelton73 5.7k
2
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1
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1.4k
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Set Difference in VCF Files
2 Votes | 1 Reply
vcf vcftools
4.1 years ago
andrew.j.skelton73 5.7k • updated 23 months ago
Biostar 20
3
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1
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898
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C: Agilent single color array
3 Votes | 1 Reply
23 months ago
andrew.j.skelton73 5.7k
1
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1
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522
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A: Proxy variants by GRCh37 position
1 Vote | 1 Reply
2.0 years ago
andrew.j.skelton73 5.7k
1
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0
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998
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A: Differential Gene Expression between 2 RNA seq groups without normal control
1 Vote | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
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0
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2.5k
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C: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
1 Vote | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
1
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2
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2.5k
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A: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
1 Vote | 2 Replies
2.1 years ago
andrew.j.skelton73 5.7k
2
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0
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506
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A: Is it normal a substantial reduction of BAM files after ordering ?
2 Votes | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
1
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1
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1.2k
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C: SNP calling in 2018
1 Vote | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
4
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1
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1.2k
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A: SNP calling in 2018
4 Votes | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
1
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0
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1.0k
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C: makeTxDbFromGFF Problem - GenomicFeatures R package
1 Vote | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
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1
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1.9k
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A: IGV command line control
0 Votes | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
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0
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483
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A: QTL /linkage trait mapping
0 Votes | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
1
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2
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806
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C: Base Recabiliration Filters out 88% of the reads
1 Vote | 2 Replies
2.1 years ago
andrew.j.skelton73 5.7k
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0
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936
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A: Cufflinks and StringTie
0 Votes | 0 Replies
2.1 years ago
andrew.j.skelton73 5.7k
1
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1
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536
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C: diffrential expression analysis
1 Vote | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
1
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1
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643
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C: Getting files from BaseMount (Using find command to loop through the symlinks)
1 Vote | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
1
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1
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643
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A: Getting files from BaseMount (Using find command to loop through the symlinks)
1 Vote | 1 Reply
2.1 years ago
andrew.j.skelton73 5.7k
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0
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2.2k
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A: Using gVCF mode in HaplotypeCaller ( GATK4)
0 Votes | 0 Replies
2.2 years ago
andrew.j.skelton73 5.7k
3
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0
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911
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A: opensource grafical user interface for filtering millions of annotated variant
3 Votes | 0 Replies
2.2 years ago
andrew.j.skelton73 5.7k
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0
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1.2k
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C: WES -- How come I found 40% mutations intron regions
0 Votes | 0 Replies
2.3 years ago
andrew.j.skelton73 5.7k
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1
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1.2k
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C: WES -- How come I found 40% mutations intron regions
0 Votes | 1 Reply
2.3 years ago
andrew.j.skelton73 5.7k
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1
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1.2k
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A: WES -- How come I found 40% mutations intron regions
0 Votes | 1 Reply
2.3 years ago
andrew.j.skelton73 5.7k
7
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2.3k
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A: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 201
7 Votes | 0 Replies
2.3 years ago
andrew.j.skelton73 5.7k
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0
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7.4k
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C: Illumina Instrument Type from fastq?
1 Vote | 0 Replies
2.3 years ago
andrew.j.skelton73 5.7k
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0
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7.4k
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C: Illumina Instrument Type from fastq?
0 Votes | 0 Replies
2.3 years ago
andrew.j.skelton73 5.7k
44
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31
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7.4k
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Illumina Instrument Type from fastq?
44 Votes | 31 Replies
fastq
3.8 years ago
andrew.j.skelton73 5.7k • updated 2.3 years ago
Devon Ryan 90k
0
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0
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1.2k
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A: WES germline CNV caller for trio analysis
0 Votes | 0 Replies
2.3 years ago
andrew.j.skelton73 5.7k
6
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1
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2.7k
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A: Alternatives to Venn Diagrams
6 Votes | 1 Reply
2.4 years ago
andrew.j.skelton73 5.7k
21
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13
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2.6k
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User Friendly VCF Filtering Tools
21 Votes | 13 Replies
variant calling vcf filtering Forum
2.4 years ago
andrew.j.skelton73 5.7k
0
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0
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2.6k
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C: User Friendly VCF Filtering Tools
0 Votes | 0 Replies
2.4 years ago
andrew.j.skelton73 5.7k
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