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andrew.j.skelton73 ♦ 5.7k
Role: Moderator
Status: New
Handle: @andrew.j.skelton739912
Reputation: 5660
Email: a*********@gmail.com
Joined: 13 months ago
Twitter: ajskelton73
Last seen: 11 months ago
Location: London

about me

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201
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Comment: C: EnhancedVulcano Package Inputing Data Format
14 months ago
andrew.j.skelton73 5.7k
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1.2k
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Comment: C: Infinium Methylation SNP
15 months ago
andrew.j.skelton73 5.7k
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1
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1.7k
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Comment: C: DNA methylation analysis with RnBeads: start analysis from Beta-values
15 months ago
andrew.j.skelton73 5.7k
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1
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410
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
16 months ago
andrew.j.skelton73 5.7k
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6.3k
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Comment: C: retrieve normalised count data from DESeq2
17 months ago
andrew.j.skelton73 5.7k
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367
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Answer: A: Extracting this data frame from a .vcf file
18 months ago
andrew.j.skelton73 5.7k
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1.8k
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Answer: A: GATK ASEReadCounter: Downstream analysis for identifying allele specific express
18 months ago
andrew.j.skelton73 5.7k
4
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1
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3.9k
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Comment: C: normalization with DEseq2
4.8 years ago
andrew.j.skelton73 5.7k • updated 19 months ago
RamRS 21k
2
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1
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458
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Answer: A: batch effect in RNAseq analysis using topcoat cufflinks pipeline
19 months ago
andrew.j.skelton73 5.7k
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458
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Comment: C: batch effect in RNAseq analysis using tophat cufflinks pipeline
19 months ago
andrew.j.skelton73 5.7k
4
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2
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410
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Answer: A: MSTRGs are plaguing my RNA-Seq analysis
19 months ago
andrew.j.skelton73 5.7k
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0
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458
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Comment: C: batch effect in RNAseq analysis using topcoat cufflinks pipeline
19 months ago
andrew.j.skelton73 5.7k
1
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0
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356
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Comment: C: get calls in R
19 months ago
andrew.j.skelton73 5.7k
1
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1
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470
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Comment: C: ATYPICAL VOLCANO PLOT RNA SEQ
21 months ago
andrew.j.skelton73 5.7k
2
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3
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571
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Answer: A: eQTL analysis considering P-values
21 months ago
andrew.j.skelton73 5.7k
2
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1
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1.2k
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Comment: C: Automation of R package loading
4.5 years ago
andrew.j.skelton73 5.7k • updated 22 months ago
RamRS 21k
1
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1
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1.2k
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Answer: A: Linkage analysis with whole -exome sequencing data
4.5 years ago
andrew.j.skelton73 5.7k • updated 22 months ago
RamRS 21k
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440
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Comment: C: WGCNA Co-expression network analysis on cuffdiff output
22 months ago
andrew.j.skelton73 5.7k
1
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0
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843
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Answer: A: Recommendations for bacterial data integration and/or System Biology
4.4 years ago
andrew.j.skelton73 5.7k • updated 22 months ago
RamRS 21k
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440
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Comment: C: WGCNA Co-expression network analysis on cuffdiff output
22 months ago
andrew.j.skelton73 5.7k
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519
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Comment: C: transcription expression matrix for DESEQ2
22 months ago
andrew.j.skelton73 5.7k
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862
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Answer: A: defining function of list of genes
4.4 years ago
andrew.j.skelton73 5.7k • updated 23 months ago
RamRS 21k
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1.1k
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Comment: C: Remove rows based on duplicates in one column
4.4 years ago
andrew.j.skelton73 5.7k • updated 23 months ago
RamRS 21k
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0
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762
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Answer: A: rna seq analysis
4.4 years ago
andrew.j.skelton73 5.7k • updated 23 months ago
RamRS 21k
7
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1
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589
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Answer: A: Is it possible to make a PCA plot for samples using TPM exprssion values in R?
23 months ago
andrew.j.skelton73 5.7k
1
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1
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519
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Answer: A: transcription expression matrix for DESEQ2
23 months ago
andrew.j.skelton73 5.7k
1
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1
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519
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Comment: C: transcription expression matrix for DESEQ2
23 months ago
andrew.j.skelton73 5.7k
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1
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764
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Comment: C: WGCNA-consensus network analysis using RNA-seq data
23 months ago
andrew.j.skelton73 5.7k
2
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1
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764
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Answer: A: WGCNA-consensus network analysis using RNA-seq data
23 months ago
andrew.j.skelton73 5.7k
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0
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390
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Comment: C: Error while doing EdgeR fro miRNA Seq analysis
23 months ago
andrew.j.skelton73 5.7k
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0
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408
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Comment: C: Lead Bioinformatician at Kew Gardens, Richmond UK
23 months ago
andrew.j.skelton73 5.7k
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2
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792
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Comment: C: Problem for getting P-Value in Module-Trait Relationship in WGCNA
24 months ago
andrew.j.skelton73 5.7k
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1
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1.4k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
24 months ago
andrew.j.skelton73 5.7k
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0
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662
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Comment: C: What is the difference between HaplotypeCaller and UnifiedGenotyper?
24 months ago
andrew.j.skelton73 5.7k
2
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1
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1.5k
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Answer: A: RNA-seq experimental design for SNP calling
24 months ago
andrew.j.skelton73 5.7k
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1
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819
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Comment: C: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
24 months ago
andrew.j.skelton73 5.7k
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597
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Comment: C: qvalues are the same, thus yielding insignificant results
2.0 years ago
andrew.j.skelton73 5.7k
1
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1
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597
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Comment: C: qvalues are the same, thus yielding insignificant results
2.0 years ago
andrew.j.skelton73 5.7k
1
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1
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597
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Answer: A: qvalues are the same, thus yielding insignificant results
2.0 years ago
andrew.j.skelton73 5.7k
0
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1
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595
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Comment: C: Cutadapt installation - user defined directory
2.0 years ago
andrew.j.skelton73 5.7k
1
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6
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2.6k
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Illumina HumanOmniExpress IDAT files
illumina idat
5.0 years ago
andrew.j.skelton73 5.7k • updated 2.1 years ago
freeseek • 40
0
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1
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643
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Comment: C: why Dseq2 does not care about the condition?
2.1 years ago
andrew.j.skelton73 5.7k • updated 2.1 years ago
RamRS 21k
3
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1
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643
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Answer: A: why Dseq2 does not care about the condition?
2.1 years ago
andrew.j.skelton73 5.7k
2
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0
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1.1k
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Answer: A: Installing MultiQC on Ubuntu
2.1 years ago
andrew.j.skelton73 5.7k
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0
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775
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Comment: C: Create a File format to store Variant
2.1 years ago
andrew.j.skelton73 5.7k
9
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2
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775
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Answer: C: Create a File format to store Variant
2.1 years ago
andrew.j.skelton73 5.7k
3
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0
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777
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Answer: A: Programming interview via Skype
2.1 years ago
andrew.j.skelton73 5.7k
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0
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355
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Comment: C: RNA BULK SEG ANALYSIS
2.1 years ago
andrew.j.skelton73 5.7k
4
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1
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994
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Answer: A: edger model matrix design of linear model
2.1 years ago
andrew.j.skelton73 5.7k
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0
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994
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Comment: C: edger model matrix design of linear model
2.1 years ago
andrew.j.skelton73 5.7k
4
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0
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647
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Comment: C: gtf sos sos!!!
2.1 years ago
andrew.j.skelton73 5.7k
5
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1
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676
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Answer: A: Does BWA mem ever edit data
2.1 years ago
andrew.j.skelton73 5.7k
1
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0
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556
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Comment: C: Relative transcript expression
2.2 years ago
andrew.j.skelton73 5.7k
2
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1
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1.2k
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Answer: A: EPIC array annotation
2.2 years ago
andrew.j.skelton73 5.7k
2
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1
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599
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Answer: A: How to filter for samples that show good concordance across replicates in DESEQ2
2.2 years ago
andrew.j.skelton73 5.7k
0
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0
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279
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Answer: A: question for Accession No. : SSR
2.2 years ago
andrew.j.skelton73 5.7k
0
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0
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336
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Answer: A: Question regarding Bioinformatics with R and large comparisons
2.2 years ago
andrew.j.skelton73 5.7k
0
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0
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617
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Comment: C: stringTie Warning message
2.2 years ago
andrew.j.skelton73 5.7k
0
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0
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750
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Answer: A: CNV calling using ExomeDepth
2.2 years ago
andrew.j.skelton73 5.7k
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0
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1.2k
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Comment: C: Linkage analysis with whole -exome sequencing data
2.2 years ago
andrew.j.skelton73 5.7k
2
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0
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4.6k
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Answer: A: Some explanation about what a paired-end sequencing really means
2.2 years ago
andrew.j.skelton73 5.7k
1
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1
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815
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Comment: C: retrospective trio analysis from WGS SNPs
2.2 years ago
andrew.j.skelton73 5.7k
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587
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Answer: A: Removing batch effects between Affymetrix and Agilent platforms using ComBat
2.3 years ago
andrew.j.skelton73 5.7k
1
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1
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845
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Comment: C: Surrogate variable analysis: ask for a practical example
2.3 years ago
andrew.j.skelton73 5.7k
4
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2
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845
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Answer: A: Surrogate variable analysis: ask for a practical example
2.3 years ago
andrew.j.skelton73 5.7k
1
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0
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648
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Comment: C: Deseq2 batch effect design issue
2.3 years ago
andrew.j.skelton73 5.7k
0
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1
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648
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Comment: C: Deseq2 batch effect design issue
2.3 years ago
andrew.j.skelton73 5.7k
1
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648
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Comment: C: Deseq2 batch effect design issue
2.3 years ago
andrew.j.skelton73 5.7k
7
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2
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835
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Answer: A: What are the requirements to use data generated in other microarray experiments
2.3 years ago
andrew.j.skelton73 5.7k
2
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0
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371
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Answer: A: Transcription Factor Network
2.3 years ago
andrew.j.skelton73 5.7k
2
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1
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1.4k
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Set Difference in VCF Files
vcf vcftools
4.5 years ago
andrew.j.skelton73 5.7k • updated 2.3 years ago
Biostar 20
3
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1
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915
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Answer: C: Agilent single color array
2.3 years ago
andrew.j.skelton73 5.7k
1
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1
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528
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Answer: A: Proxy variants by GRCh37 position
2.4 years ago
andrew.j.skelton73 5.7k
1
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1.0k
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Answer: A: Differential Gene Expression between 2 RNA seq groups without normal control
2.4 years ago
andrew.j.skelton73 5.7k
1
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0
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2.5k
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Comment: C: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
2.4 years ago
andrew.j.skelton73 5.7k
1
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2
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2.5k
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Answer: A: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
2.4 years ago
andrew.j.skelton73 5.7k
2
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0
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512
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Answer: A: Is it normal a substantial reduction of BAM files after ordering ?
2.4 years ago
andrew.j.skelton73 5.7k
1
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1
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1.2k
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Comment: C: SNP calling in 2018
2.4 years ago
andrew.j.skelton73 5.7k
4
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1
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1.2k
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Answer: A: SNP calling in 2018
2.4 years ago
andrew.j.skelton73 5.7k
1
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0
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1.0k
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Comment: C: makeTxDbFromGFF Problem - GenomicFeatures R package
2.4 years ago
andrew.j.skelton73 5.7k
0
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1
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1.9k
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Answer: A: IGV command line control
2.4 years ago
andrew.j.skelton73 5.7k
0
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0
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491
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Answer: A: QTL /linkage trait mapping
2.5 years ago
andrew.j.skelton73 5.7k
1
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2
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818
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Answer: C: Base Recabiliration Filters out 88% of the reads
2.5 years ago
andrew.j.skelton73 5.7k
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0
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943
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Answer: A: Cufflinks and StringTie
2.5 years ago
andrew.j.skelton73 5.7k
1
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1
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547
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Comment: C: diffrential expression analysis
2.5 years ago
andrew.j.skelton73 5.7k
1
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1
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654
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Comment: C: Getting files from BaseMount (Using find command to loop through the symlinks)
2.5 years ago
andrew.j.skelton73 5.7k
1
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1
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654
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Answer: A: Getting files from BaseMount (Using find command to loop through the symlinks)
2.5 years ago
andrew.j.skelton73 5.7k
0
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0
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2.2k
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Answer: A: Using gVCF mode in HaplotypeCaller ( GATK4)
2.5 years ago
andrew.j.skelton73 5.7k
3
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0
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921
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Answer: A: opensource grafical user interface for filtering millions of annotated variant
2.5 years ago
andrew.j.skelton73 5.7k
0
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0
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1.2k
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Comment: C: WES -- How come I found 40% mutations intron regions
2.6 years ago
andrew.j.skelton73 5.7k
0
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1
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1.2k
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Comment: C: WES -- How come I found 40% mutations intron regions
2.6 years ago
andrew.j.skelton73 5.7k
0
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1
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1.2k
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Answer: A: WES -- How come I found 40% mutations intron regions
2.6 years ago
andrew.j.skelton73 5.7k
7
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0
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2.3k
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Answer: A: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 201
2.6 years ago
andrew.j.skelton73 5.7k
1
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0
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7.4k
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Comment: C: Illumina Instrument Type from fastq?
2.7 years ago
andrew.j.skelton73 5.7k
0
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0
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7.4k
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Comment: C: Illumina Instrument Type from fastq?
2.7 years ago
andrew.j.skelton73 5.7k
44
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31
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7.4k
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Illumina Instrument Type from fastq?
fastq
4.1 years ago
andrew.j.skelton73 5.7k • updated 2.7 years ago
Devon Ryan 90k
0
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0
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1.2k
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Answer: A: WES germline CNV caller for trio analysis
2.7 years ago
andrew.j.skelton73 5.7k
6
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1
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2.7k
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Answer: A: Alternatives to Venn Diagrams
2.7 years ago
andrew.j.skelton73 5.7k
21
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13
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2.6k
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Forum: User Friendly VCF Filtering Tools
variant calling vcf filtering Forum
2.7 years ago
andrew.j.skelton73 5.7k
0
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0
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2.6k
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Comment: C: User Friendly VCF Filtering Tools
2.7 years ago
andrew.j.skelton73 5.7k
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