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202
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Answer: Answer: Generating .bed file and .map file for polyploid vcf file through plink
6 days ago by chrchang523 10k
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0
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346
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Answer: Answer: Force PLINK2 to neglect chrX as the sex chromosome
16 days ago by chrchang523 10k
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0
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404
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Answer: Answer: Easy way to find out which allele is minor allele from bed file?
16 days ago by chrchang523 10k
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0
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2.5k
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Comment: Comment: Problem to remove subset of patients with plink
27 days ago by chrchang523 10k
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0
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491
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Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
5 weeks ago by chrchang523 10k
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0
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1.3k
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Comment: Comment: PLINK p value returning NA
5 weeks ago by chrchang523 10k
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0
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452
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Answer: Answer: PCA results from PLINK and Hail vastly different
12 weeks ago by chrchang523 10k
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1
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788
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
3 months ago by chrchang523 10k
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1
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585
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Comment: Comment: merging VCF files using bcftools - everyone becomes related
3 months ago by chrchang523 10k
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3
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788
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
3 months ago by chrchang523 10k
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0
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513
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
3 months ago by chrchang523 10k
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1
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542
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Answer: Answer: allele matching between identical genotypes
3 months ago by chrchang523 10k
2
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1
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400
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Answer: Answer: number of homozygotes with phenotype
4 months ago by chrchang523 10k
2
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1
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556
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Answer: Answer: HWE test different result according Pheno data
4 months ago by chrchang523 10k
1
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1
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484
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Answer: Answer: Clumping with r2=0 and 250kb radius in plink
6 months ago by chrchang523 10k
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0
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675
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Comment: Comment: PLINK Error: No valid entries in --score file
6 months ago by chrchang523 10k
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0
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508
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Answer: Answer: Plink Error
6 months ago by chrchang523 10k
0
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0
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898
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Comment: Comment: Allele frequncies in plink including physical position in the output
7 months ago by chrchang523 10k
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1
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898
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Answer: Answer: Allele frequncies in plink including physical position in the output
7 months ago by chrchang523 10k
0
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1
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898
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Comment: Comment: Allele frequncies in plink including physical position in the output
7 months ago by chrchang523 10k
1
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0
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483
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Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
7 months ago by chrchang523 10k
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0
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1.2k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
7 months ago by chrchang523 10k
0
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0
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537
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Comment: Comment: Restricting vcf entries based on ID length
7 months ago by chrchang523 10k
2
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0
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594
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Answer: Answer: Filter VCF File by VCF Format Variants
8 months ago by chrchang523 10k
3
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0
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691
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Answer: Answer: reading pgen file into R
9 months ago by chrchang523 10k
1
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0
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739
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Comment: Comment: simulation
9 months ago by chrchang523 10k
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1
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1.4k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
9 months ago by chrchang523 10k
0
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1
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1.4k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
9 months ago by chrchang523 10k
0
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1
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1.4k
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Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
10 months ago by chrchang523 10k
0
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0
replies
519
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Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
10 months ago by chrchang523 10k
0
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0
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616
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Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
10 months ago by chrchang523 10k
0
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0
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464
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Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
10 months ago by chrchang523 10k
0
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0
replies
503
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Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
10 months ago by chrchang523 10k
0
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0
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917
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Answer: Answer: PLINK1.9 check sex problem
10 months ago by chrchang523 10k
0
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0
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615
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Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
11 months ago by chrchang523 10k
1
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0
replies
668
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Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
11 months ago by chrchang523 10k
2
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0
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937
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Comment: Comment: How to calculate kinship matrix table from vcf file
11 months ago by chrchang523 10k
1
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0
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470
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
11 months ago by chrchang523 10k
0
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0
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831
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Comment: Comment: PLINK not converting entire vcf to bed file
12 months ago by chrchang523 10k
0
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0
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1.2k
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Comment: Comment: Linkage Disequilibrium with Plink
12 months ago by chrchang523 10k
0
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1
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1.2k
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Answer: Answer: Linkage Disequilibrium with Plink
12 months ago by chrchang523 10k
2
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0
replies
2.1k
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Answer: Answer: KING kinship inference error
12 months ago by chrchang523 10k
1
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0
replies
756
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Answer: Answer: Where do I get a large reference VCF?
12 months ago by chrchang523 10k
1
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1
reply
908
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Comment: Comment: PLINK Error: Invalid QUAL value on line
13 months ago by chrchang523 10k
1
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1
reply
908
views
Answer: Answer: PLINK Error: Invalid QUAL value on line
13 months ago by chrchang523 10k
2
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0
replies
764
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Answer: Answer: Calculate the kinship matrix from NGS data
13 months ago by chrchang523 10k
0
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0
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466
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Answer: Answer: invalid --hwe parameter sequence error when doing QC
15 months ago by chrchang523 10k
0
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0
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1.1k
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Answer: Answer: make BED file from existing BIM and FAM files
15 months ago by chrchang523 10k
0
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1
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1.9k
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Comment: Comment: PLINK2 selecting variants based on INFO score
15 months ago by chrchang523 10k
0
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1
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1.9k
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Comment: Comment: PLINK2 selecting variants based on INFO score
15 months ago by chrchang523 10k
896 results • Page 1 of 18
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