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Adrian Pelin ♦ 2.3k
Status: New
Handle: @Adrian Pelin9259
Reputation: 2270
Email: a**********@uottawa.ca
Joined: 12 months ago
Last seen: 13 months ago
Location: Canada

Comparative and Population Genomics of Microsporidia. Comparative and Functional Genomics of Cryptomycotans.

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111
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C: Generating Interaction map
13 months ago
Adrian Pelin ♦ 2.3k
3
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2
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111
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Generating Interaction map
cytoscape interactome R
13 months ago
Adrian Pelin ♦ 2.3k • updated 13 months ago
Jean-Karim Heriche 19k
4
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5
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2.7k
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Perl Script To Retrieve All Orf?
orf perl
6.3 years ago
Adrian Pelin ♦ 2.3k • updated 14 months ago
Abhishek • 20
0
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1
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228
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C: HISAT2 output direct to bam
14 months ago
Adrian Pelin ♦ 2.3k • updated 14 months ago
ATpoint 17k
5
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4
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228
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HISAT2 output direct to bam
RNA-Seq samtools
14 months ago
Adrian Pelin ♦ 2.3k • updated 14 months ago
ATpoint 17k
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0
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2.7k
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C: hisat2 command line fastq to bam
14 months ago
Adrian Pelin ♦ 2.3k
0
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0
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201
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C: Extracting sequence and annotation of a particular gene
15 months ago
Adrian Pelin ♦ 2.3k
1
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2
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201
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Extracting sequence and annotation of a particular gene
Annotation GTF
15 months ago
Adrian Pelin ♦ 2.3k • updated 15 months ago
ATpoint 17k
0
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0
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185
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C: Virus RNA Seq reads mapping with salmon
15 months ago
Adrian Pelin ♦ 2.3k
1
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1
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185
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A: Virus RNA Seq reads mapping with salmon
15 months ago
Adrian Pelin ♦ 2.3k
0
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0
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1.4k
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C: How to get percent identity from bam file ?
16 months ago
Adrian Pelin ♦ 2.3k
1
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0
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16k
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C: BLAST, setting maximum number of hits
5.4 years ago
Adrian Pelin ♦ 2.3k • updated 16 months ago
RamRS 21k
2
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2
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216
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Comparing NCI-60 transcriptome with another variable to determine genes that correlate
RNA-Seq NCI60
18 months ago
Adrian Pelin ♦ 2.3k • updated 18 months ago
cannin • 250
1
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0
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377
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C: bash & quickGO to download gene symbols of a GO term
18 months ago
Adrian Pelin ♦ 2.3k
2
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4
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377
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bash & quickGO to download gene symbols of a GO term
Annotations GO bash
19 months ago
Adrian Pelin ♦ 2.3k • updated 18 months ago
EagleEye 6.4k
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0
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377
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C: bash & quickGO to download gene symbols of a GO term
19 months ago
Adrian Pelin ♦ 2.3k
6
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7
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491
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RNA-seq analysis of virally infected cells
RNA-Seq virus host
22 months ago
Adrian Pelin ♦ 2.3k • updated 20 months ago
Biostar 20
4
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7
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2.7k
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How To Check For Ploidy Using Ngs Only?
ngs mapping
6.4 years ago
Adrian Pelin ♦ 2.3k • updated 21 months ago
kamiljaron • 120
2
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8
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1.4k
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Demultiplexing SRA data
SRA NGS Illumina multiplex
4.4 years ago
Adrian Pelin ♦ 2.3k • updated 21 months ago
RamRS 21k
0
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1
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1.4k
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C: Demultiplexing SRA data
4.4 years ago
Adrian Pelin ♦ 2.3k • updated 21 months ago
RamRS 21k
1
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0
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35k
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C: Converting Bam To Fastq
5.5 years ago
Adrian Pelin ♦ 2.3k • updated 22 months ago
RamRS 21k
0
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1
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491
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C: RNA-seq analysis of virally infected cells
22 months ago
Adrian Pelin ♦ 2.3k
0
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1
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491
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C: RNA-seq analysis of virally infected cells
22 months ago
Adrian Pelin ♦ 2.3k
1
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0
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491
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C: RNA-seq analysis of virally infected cells
22 months ago
Adrian Pelin ♦ 2.3k
1
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1
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740
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A: FPKM matrix after stringtie using ballgown
22 months ago
Adrian Pelin ♦ 2.3k
5
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8
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2.6k
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Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
bed NGS scaffolding Assembly
4.9 years ago
Adrian Pelin ♦ 2.3k • updated 2.1 years ago
michael • 0
4
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8
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1.9k
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How To Phase Haplotypes In A Highly Polymorphic Genome
vcf variant-calling
6.5 years ago
Adrian Pelin ♦ 2.3k • updated 2.4 years ago
Biostar 20
0
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0
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2.9k
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C: Anybody Managed To Make Inparanoid Work?
2.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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657
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C: Detecting junctions from reads spanning large indels
2.7 years ago
Adrian Pelin ♦ 2.3k
0
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1
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657
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C: Detecting junctions from reads spanning large indels
2.7 years ago
Adrian Pelin ♦ 2.3k
3
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5
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657
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Detecting junctions from reads spanning large indels
DNA-seq sam
2.7 years ago
Adrian Pelin ♦ 2.3k • updated 2.7 years ago
Pierre Lindenbaum 120k
0
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1
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832
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C: Filter sam file to remove reads with large deletions
2.7 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.0k
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C: bedtools merge - removing features completly overlapped by other features
2.8 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.0k
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C: bedtools merge - removing features completly overlapped by other features
2.8 years ago
Adrian Pelin ♦ 2.3k
1
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7
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1.0k
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bedtools merge - removing features completly overlapped by other features
bedtools
2.8 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.0k
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C: bedtools merge - removing features completly overlapped by other features
2.8 years ago
Adrian Pelin ♦ 2.3k
0
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2
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1.2k
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C: Phylogeny: tree branch length on a log scale
2.9 years ago
Adrian Pelin ♦ 2.3k
1
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4
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1.2k
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Phylogeny: tree branch length on a log scale
FigTree phylogeny
2.9 years ago
Adrian Pelin ♦ 2.3k
4
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2
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3.4k
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Command blast excluding species
blast
6.1 years ago
Adrian Pelin ♦ 2.3k • updated 3.0 years ago
Biostar 20
2
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4
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1.9k
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Detecting Variants near repeats
freebayes vcf bam repeats
6.1 years ago
Adrian Pelin ♦ 2.3k • updated 3.3 years ago
Macspider ♦ 2.8k
2
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0
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6.2k
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C: Nextera Transposon Contamination
3.4 years ago
Adrian Pelin ♦ 2.3k
12
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7
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8.1k
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Removing PCR duplicates from .fastq without .bam alignment
PCR duplicates illumina fastq
5.6 years ago
Adrian Pelin ♦ 2.3k • updated 3.5 years ago
Brian Bushnell 16k
0
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0
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552
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C: Merge/Collapse regions within a certain distance
3.5 years ago
Adrian Pelin ♦ 2.3k
0
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0
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552
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C: Merge/Collapse regions within a certain distance
3.5 years ago
Adrian Pelin ♦ 2.3k
1
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3
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552
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Merge/Collapse regions within a certain distance
bedtools
3.5 years ago
Adrian Pelin ♦ 2.3k • updated 3.5 years ago
Pierre Lindenbaum 120k
0
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0
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1.1k
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C: ABYSS kmer coverage
3.5 years ago
Adrian Pelin ♦ 2.3k
0
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0
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1.1k
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C: ABYSS kmer coverage
3.5 years ago
Adrian Pelin ♦ 2.3k
1
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1
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724
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multiIntersectBed for SNPs, need to compare but not merge intervals
SNP bedtools intersect
3.5 years ago
Adrian Pelin ♦ 2.3k • updated 3.5 years ago
Alex Reynolds 28k
2
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4
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2.5k
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Genetic Distance Versus Physical Distance
distance
6.5 years ago
Adrian Pelin ♦ 2.3k • updated 3.6 years ago
panly89 • 10
6
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4
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1.3k
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Predict AA sequence from assembled transcripts
RNA-Seq Assembly nt2aa
5.4 years ago
Adrian Pelin ♦ 2.3k • updated 3.6 years ago
Biostar 20
1
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1
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3.8k
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C: Awk- How to compare 2 files with common columns and then get the output file wit
3.7 years ago
Adrian Pelin ♦ 2.3k
1
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0
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949
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C: Is this de novo assembly too big for proteomics?
4.1 years ago
Adrian Pelin ♦ 2.3k
0
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1
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2.6k
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C: Fisher's exact test gives p-value 0
4.1 years ago
Adrian Pelin ♦ 2.3k
6
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6
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2.6k
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Fisher's exact test gives p-value 0
enrichment R fisher's exact test
4.1 years ago
Adrian Pelin ♦ 2.3k
2
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3
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4.8k
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RPS Blast, COG and KOG analysis
KOG COG RPSBLAST
5.3 years ago
Adrian Pelin ♦ 2.3k • updated 4.2 years ago
Shyam • 130
0
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0
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2.7k
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C: BaseSpace says NextSeq run finished, can't download FastQ
4.2 years ago
Adrian Pelin ♦ 2.3k
3
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4
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2.7k
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BaseSpace says NextSeq run finished, can't download FastQ
DNA-Seq illumina basespace
4.2 years ago
Adrian Pelin ♦ 2.3k • updated 4.2 years ago
igor 7.7k
0
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0
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2.7k
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C: BaseSpace says NextSeq run finished, can't download FastQ
4.2 years ago
Adrian Pelin ♦ 2.3k
0
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0
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2.5k
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C: Best tool for Fst calculation with over a thousand SNP among 6 populations??
4.2 years ago
Adrian Pelin ♦ 2.3k
0
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1
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4.3k
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C: dxy (Nei 1987) calculation
4.3 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.1k
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C: Denovo assembly of Putative Plasmid
4.3 years ago
Adrian Pelin ♦ 2.3k
0
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1
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2.4k
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C: Benefits of 150 bp reads over 100 bp reads in RNA-seq
4.3 years ago
Adrian Pelin ♦ 2.3k
2
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0
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1.3k
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C: reconstructing a phylogenetic multilocus tree
4.3 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.4k
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C: Demultiplexing SRA data
4.4 years ago
Adrian Pelin ♦ 2.3k
2
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4
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1.6k
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RNA-seq experiment of mouse organs
RNA-Seq mouse SRA NGS
4.4 years ago
Adrian Pelin ♦ 2.3k • updated 4.4 years ago
h.mon 25k
1
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0
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1.1k
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C: 14 contigs recieved from SMRTportal using HGAP.3
4.4 years ago
Adrian Pelin ♦ 2.3k
0
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0
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2.7k
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C: How to assemble the bacterial genome; spades
4.4 years ago
Adrian Pelin ♦ 2.3k
1
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2
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2.7k
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A: How to assemble the bacterial genome; spades
4.4 years ago
Adrian Pelin ♦ 2.3k
0
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1
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1.6k
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A: To compare assembled transcripts of two species
4.4 years ago
Adrian Pelin ♦ 2.3k
0
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0
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1.0k
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C: how sequenced? dna between the pair-end reads
4.5 years ago
Adrian Pelin ♦ 2.3k
12
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7
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4.6k
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Any software to view newick/nexus trees command line?
phylogeny cmd
5.6 years ago
Adrian Pelin ♦ 2.3k • updated 4.5 years ago
rezam • 20
0
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0
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989
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C: Compare two methods
4.5 years ago
Adrian Pelin ♦ 2.3k
2
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1
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1.0k
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Find restriction enzyme combo that cuts every 2-3kb best
Genome restriction
4.6 years ago
Adrian Pelin ♦ 2.3k • updated 4.5 years ago
harold.smith.tarheel ♦ 4.4k
0
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0
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2.8k
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C: Plasmid Genome Assembly
4.5 years ago
Adrian Pelin ♦ 2.3k
0
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0
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1.4k
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UCSC_TFBS enrichment with DAVID
TF DAVID
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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12k
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C: Most "Accurate" Gtf File For Cufflinks??
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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1
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2.8k
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A: Plasmid Genome Assembly
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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2
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1.2k
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Determine likely TF(s) regulating a list of genes
microarray gene regulatiom ncRNA TF
4.6 years ago
Adrian Pelin ♦ 2.3k • updated 4.6 years ago
Manuel Landesfeind ♦ 1.2k
0
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0
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1.2k
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C: microRNA target prediction based on sequence
4.6 years ago
Adrian Pelin ♦ 2.3k
1
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0
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1.1k
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A: Given 3 FASTA files, how can I find putative orthologs?
4.6 years ago
Adrian Pelin ♦ 2.3k
4
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15
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5.3k
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Error in SNP calling, samtools
bcftools vcf SNP NGS
6.0 years ago
Adrian Pelin ♦ 2.3k • updated 4.6 years ago
vassialk • 190
0
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0
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1.4k
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C: RNA-Seq DE advice please!
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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5.7k
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C: How to remove contamination from the transcriptome assembly
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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1
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5.7k
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C: How to remove contamination from the transcriptome assembly
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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2.7k
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C: De novo genome assembly strategy
4.6 years ago
Adrian Pelin ♦ 2.3k
3
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3
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2.7k
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A: De novo genome assembly strategy
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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2.4k
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C: Why most of alternative alleles are the alleles with major frequency?
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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1
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2.4k
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A: Why most of alternative alleles are the alleles with major frequency?
4.6 years ago
Adrian Pelin ♦ 2.3k
4
Votes
5
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1.8k
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bwa mapping to several similar strains, restrict maximum hits?
bwa sam bwa-mem bwa-aln fasta
5.7 years ago
Adrian Pelin ♦ 2.3k • updated 4.6 years ago
Biostar 20
1
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1
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1.5k
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A: finding reads from fastq files corresponds to particular transcript from fasta f
4.6 years ago
Adrian Pelin ♦ 2.3k
1
Vote
1
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913
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A: Where to find the reference genome from the Human Genome Project?
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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3.6k
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C: How to draw a coverage vs GC content plot for assembled transcriptome?
4.6 years ago
Adrian Pelin ♦ 2.3k
2
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1
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3.6k
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A: How to draw a coverage vs GC content plot for assembled transcriptome?
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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1
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3.6k
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C: How to draw a coverage vs GC content plot for assembled transcriptome?
4.6 years ago
Adrian Pelin ♦ 2.3k
0
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0
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11k
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C: How To Combine Two Samtools Commands.
4.6 years ago
Adrian Pelin ♦ 2.3k
1
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1
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3.8k
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C: DNA composition - all k-mers and their frequency in some sequencing data
4.6 years ago
Adrian Pelin ♦ 2.3k
1
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1
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3.8k
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C: DNA composition - all k-mers and their frequency in some sequencing data
4.6 years ago
Adrian Pelin ♦ 2.3k
1
Vote
1
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3.8k
Views
C: DNA composition - all k-mers and their frequency in some sequencing data
4.6 years ago
Adrian Pelin ♦ 2.3k
1
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1
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5.7k
Views
C: How to remove contamination from the transcriptome assembly
4.7 years ago
Adrian Pelin ♦ 2.3k
1
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0
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3.2k
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C: Spades Assembler output
4.7 years ago
Adrian Pelin ♦ 2.3k
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