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Showing :
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1
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1.8k
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Answer:
Answer: Rshiny - ggplot - density plot
2.7 years ago by
komal.rathi
★ 4.1k
3
votes
0
replies
4.2k
views
Answer:
A: using hclust object from FactoMineR::HCPC to force clustering in pheatmap
3.8 years ago by
komal.rathi
★ 4.1k
1
vote
2
replies
7.4k
views
Answer:
A: Genomic Features - makeTranscriptDbFromGFF()
updated 4.3 years ago by
Ram
43k • written 9.9 years ago by
komal.rathi
★ 4.1k
4
votes
0
replies
7.3k
views
Answer:
A: how to retrieve the nucleotide/base in a certain position using any programming
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
2.7k
views
Answer:
A: Gene lists from RNA Seq and Chip Seq
updated 4.4 years ago by
Ram
43k • written 9.6 years ago by
komal.rathi
★ 4.1k
0
votes
0
replies
1.8k
views
Answer:
A: How to create Gene_transcript association matrix with genome version hg19?
updated 4.6 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
10.0k
views
Answer:
Answer: Preparing a .genome file for snpEff
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
5
votes
0
replies
4.5k
views
Answer:
A: How to get known canonical transcript information from UCSC for a specific genco
5.0 years ago by
komal.rathi
★ 4.1k
6
votes
1
reply
4.2k
views
Answer:
A: Normalization of RNASeq read counts without conditions
6.9 years ago by
komal.rathi
★ 4.1k
1
vote
0
replies
1.6k
views
Answer:
A: TCGA disease subtype information
7.3 years ago by
komal.rathi
★ 4.1k
6
votes
0
replies
3.3k
views
Answer:
A: Hi-C analysis and significant interactions
7.6 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
3.7k
views
Answer:
A: changing gtf file manually
7.6 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
2.8k
views
Answer:
A: Batch query obsolete gene names to get current HGNC symbol
7.9 years ago by
komal.rathi
★ 4.1k
7
votes
1
reply
26k
views
Answer:
Answer: how to retrieve mouse (mm10) gene information from Ensemble using Biomart inR
updated 16 months ago by
Ram
43k • written 8.9 years ago by
komal.rathi
★ 4.1k
2
votes
4
replies
13k
views
Answer:
Answer: Convert BED(UCSC) to VCF
updated 2.7 years ago by
Ram
43k • written 8.9 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
2.0k
views
Answer:
Answer: find interactions among genes
updated 16 months ago by
Ram
43k • written 8.9 years ago by
komal.rathi
★ 4.1k
1
vote
0
replies
1.7k
views
Answer:
Answer: Insert a fasta sequence into TFBStools under R environment
updated 15 months ago by
Ram
43k • written 8.9 years ago by
komal.rathi
★ 4.1k
2
votes
0
replies
15k
views
Answer:
Answer: How to use Combat in R??
updated 15 months ago by
Ram
43k • written 8.9 years ago by
komal.rathi
★ 4.1k
7
votes
1
reply
6.3k
views
Answer:
Answer: How can I do the "fdr" mutiple test correction to the GO enrichment results from
updated 16 months ago by
Ram
43k • written 9.0 years ago by
komal.rathi
★ 4.1k
0
votes
1
reply
5.6k
views
Answer:
A: improve my slow R function
9.0 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
2.5k
views
Answer:
Answer: significant values after a fisher test
updated 22 months ago by
Ram
43k • written 9.1 years ago by
komal.rathi
★ 4.1k
8
votes
1
reply
13k
views
Answer:
Answer: How to remove reads with hard/soft clipping along with its mate?
updated 22 months ago by
Ram
43k • written 9.1 years ago by
komal.rathi
★ 4.1k
13
votes
0
replies
13k
views
Answer:
Answer: biomart gene coordinates do not correspond to genome browser
updated 22 months ago by
Ram
43k • written 9.1 years ago by
komal.rathi
★ 4.1k
2
votes
1
reply
3.5k
views
Answer:
Answer: BiomaRT, retrieve exon positions but filter to chrosomal region
updated 23 months ago by
Ram
43k • written 9.1 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
16k
views
Answer:
Answer: R programming question: extract all the rows matching Ids
updated 23 months ago by
Ram
43k • written 9.1 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
12k
views
Answer:
Answer: how can i convert gene symbol to affymetrix IDs ?
updated 23 months ago by
Ram
43k • written 9.2 years ago by
komal.rathi
★ 4.1k
0
votes
1
reply
3.9k
views
Answer:
A: [NOISeq] Error in noiseqbio - filter out low counts
9.2 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
26k
views
Answer:
Answer: filter out multiple rows based on values in columns - perl and R attempt
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
3.0k
views
Answer:
Answer: "three genes" exemple in genoplotR
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
komal.rathi
★ 4.1k
2
votes
1
reply
4.0k
views
Answer:
Answer: R phylogeny plot together with barplot
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
5.8k
views
Answer:
Answer: How to get the expression data of each gene from the ArrayExpress database.
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
0
votes
1
reply
8.8k
views
Answer:
Answer: GSEA matrix error appears during analysis
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
14
votes
3
replies
11k
views
Answer:
A: Partial or complete overlap of two genomic ranges
9.4 years ago by
komal.rathi
★ 4.1k
2
votes
0
replies
3.4k
views
Answer:
A: "for loop" and AUTOPLOT function
9.4 years ago by
komal.rathi
★ 4.1k
0
votes
1
reply
1.7k
views
Answer:
Answer: Alternative spliced genes in A. thaliana
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
7
votes
2
replies
5.9k
views
Answer:
A: How the best way to verify the up and down regulated genes in a list of DE genes
9.4 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
3.1k
views
Answer:
Answer: How to add gap line in lncRNA graph by using ggplot
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
6
votes
2
replies
17k
views
Answer:
Answer: What is the best way to match gene id with gene name.
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
7.4k
views
Answer:
Answer: Filter a bam file
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
5.3k
views
Answer:
Answer: genoPlotR in R
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
5
votes
1
reply
5.8k
views
Answer:
Answer: How can I convert the blast results into a matrix?
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
3.9k
views
Answer:
C: Multiple Sequence Alignments In R
9.5 years ago by
komal.rathi
★ 4.1k
9
votes
2
replies
9.0k
views
Answer:
Answer: Association between bed files - statistical significance
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
1
vote
1
reply
4.9k
views
Answer:
Answer: how to download only viridiplantae miRNA from miRBase.
updated 2.7 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
3
votes
2
replies
12k
views
Answer:
Answer: gtf file for htseq count
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
1
vote
0
replies
2.3k
views
Answer:
Answer: How to create transcript-gene association matrix using Refseq IDs ?
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
5
votes
1
reply
3.1k
views
Answer:
C: DEXSeq with cufflinks gtf file
9.5 years ago by
komal.rathi
★ 4.1k
8
votes
2
replies
7.0k
views
Answer:
Answer: Downloading ENCODE regulation data in .bed format by cell line
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
3
votes
1
reply
4.5k
views
Answer:
Answer: Annotation of exon array on probeset id and transcriptclusterids using biomaRT
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
4
votes
1
reply
5.2k
views
Answer:
Answer: Ensembl: Protein coding transcript ids
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
komal.rathi
★ 4.1k
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