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Comment: C: Finding the cause for corrupt ChIP-Seq data
4.1 years ago by colin.kern ★ 1.1k
1
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1
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3.8k
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Comment: C: bamCompare output values ChIP/input normalization
4.1 years ago by colin.kern ★ 1.1k
0
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1
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3.8k
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Comment: C: bamCompare output values ChIP/input normalization
4.1 years ago by colin.kern ★ 1.1k
1
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0
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4.9k
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Comment: C: How to visualize narrowPeak file after peak calling using MACS?
4.2 years ago by colin.kern ★ 1.1k
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1
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4.9k
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Comment: C: How to visualize narrowPeak file after peak calling using MACS?
4.2 years ago by colin.kern ★ 1.1k
1
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0
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2.1k
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Comment: C: How to remove lines/headers from a SAM file after combined from different lanes
4.2 years ago by colin.kern ★ 1.1k
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0
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4.9k
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Comment: C: How to visualize narrowPeak file after peak calling using MACS?
4.2 years ago by colin.kern ★ 1.1k
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0
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1.5k
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Comment: C: Want read count with respect to geneID instead of transcript IDs
4.5 years ago by colin.kern ★ 1.1k
0
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0
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939
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Comment: C: Why is the pValue peaks very high in EpigenomeRoadMap data.
4.5 years ago by colin.kern ★ 1.1k
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0
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1.2k
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Comment: C: GC bias correction for Chip-SEQ
4.5 years ago by colin.kern ★ 1.1k
1
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0
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1.3k
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Comment: C: MACS2 "total fragments in treatment" gives less number of fragments than expecte
4.5 years ago by colin.kern ★ 1.1k
1
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0
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4.0k
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Comment: C: Which one to use for ChipSeq replicate comparison: Spearman or Pearson
4.5 years ago by colin.kern ★ 1.1k
0
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0
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1.3k
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Comment: C: Do all samples in SRA have a corresponding sample in BioSample?
4.5 years ago by colin.kern ★ 1.1k
1
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0
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7.7k
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Comment: C: Difference between abundance and counts
4.5 years ago by colin.kern ★ 1.1k
0
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1
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1.9k
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Comment: C: One question about featureCounts
4.6 years ago by colin.kern ★ 1.1k
2
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0
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842
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Comment: C: How do I determine if an mRNA was made with strand or non strand method?
4.6 years ago by colin.kern ★ 1.1k
2
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1
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2.6k
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Comment: C: differences between featureCounts and htseq-count
4.6 years ago by colin.kern ★ 1.1k
0
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0
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1.3k
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Comment: C: Minimal mapping score of bowtie2
4.6 years ago by colin.kern ★ 1.1k
1
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1
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3.7k
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Comment: C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
4.6 years ago by colin.kern ★ 1.1k
1
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1
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2.6k
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Comment: C: Advice on Handling Batch Effect in ChIP-seq Experiment
4.6 years ago by colin.kern ★ 1.1k
0
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0
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1.5k
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Comment: C: ChIP-seq heatmaps using binding site of an specific protein as a reference
4.6 years ago by colin.kern ★ 1.1k
1
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1
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3.8k
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Comment: C: Are MACS2's summit or DiffBind's summit options are recommended for histone mark
4.7 years ago by colin.kern ★ 1.1k
0
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1
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3.3k
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Comment: C: low alignment rate with bowtie2 of ChIP-seq data 150bp pair end
4.7 years ago by colin.kern ★ 1.1k
1
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1
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2.8k
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Comment: C: H3K4me3 in promoter regions, which are free of nucleosomes
4.7 years ago by colin.kern ★ 1.1k
1
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0
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1.9k
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Comment: C: Is there a good way to do a PCA of gene expression including samples from differ
4.7 years ago by colin.kern ★ 1.1k
0
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1
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1.9k
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Comment: C: Is there a good way to do a PCA of gene expression including samples from differ
4.7 years ago by colin.kern ★ 1.1k
0
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0
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1.9k
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Comment: C: Chip-seq H3k27 Bowtie2 Alignement
4.7 years ago by colin.kern ★ 1.1k
0
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1
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1.9k
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Comment: C: Chip-seq H3k27 Bowtie2 Alignement
4.7 years ago by colin.kern ★ 1.1k
0
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0
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2.0k
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Comment: C: Amount of variants increased after bedtools subtract
4.8 years ago by colin.kern ★ 1.1k
0
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1
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671
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Comment: C: Coming from farm animal genomes, how do I deal with the large assemblies for mou
4.8 years ago by colin.kern ★ 1.1k
0
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1
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1.9k
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Comment: C: Differential Expression Analysis with batches which have different biological gr
4.8 years ago by colin.kern ★ 1.1k
0
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0
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1.1k
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Comment: C: bedtools closest return no output!
4.8 years ago by colin.kern ★ 1.1k
0
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0
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1.9k
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Comment: C: Strand specification problem at deeptools (computeMatrix)
4.8 years ago by colin.kern ★ 1.1k
0
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1
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2.7k
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Comment: C: fastq file error
4.9 years ago by colin.kern ★ 1.1k
0
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2
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2.0k
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Comment: C: HTSeq count error while trying to read bam file
4.9 years ago by colin.kern ★ 1.1k
0
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0
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3.2k
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Comment: C: ChromHMM: chromatin states to genome % coverage?
4.9 years ago by colin.kern ★ 1.1k
1
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0
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2.4k
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Comment: C: Question about ChromHMM overlap enrichment
4.9 years ago by colin.kern ★ 1.1k
0
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0
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2.0k
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Comment: C: macs2 callpeak results
4.9 years ago by colin.kern ★ 1.1k
0
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1
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1.6k
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Comment: C: How can I figure out the NCBI annotation version of a GFF file?
5.7 years ago by colin.kern ★ 1.1k
0
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0
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1.7k
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Comment: C: Using UCSC Genome Browser with results from NCBI or Ensembl assemblies
6.3 years ago by colin.kern ★ 1.1k
0
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1
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2.1k
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Comment: C: Does Cuffmerge discard single-exon transcripts?
7.7 years ago by colin.kern ★ 1.1k
0
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0
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3.6k
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Comment: C: vcf-consensus Error: Fasta sequence does not match REF
7.8 years ago by colin.kern ★ 1.1k
0
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0
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2.5k
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Comment: C: Get transcript sequence from RNA-seq
7.8 years ago by colin.kern ★ 1.1k
0
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1
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8.9k
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Comment: C: Split BAM file into two subsamples
8.2 years ago by colin.kern ★ 1.1k
0
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0
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8.9k
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Comment: C: Split BAM file into two subsamples
8.2 years ago by colin.kern ★ 1.1k
0
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1
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1.8k
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Comment: C: Cuffcompare or Cuffmerge for tissue specificity?
8.5 years ago by colin.kern ★ 1.1k
0
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0
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2.3k
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Comment: C: Stop BLAST search on any hit
8.5 years ago by colin.kern ★ 1.1k
1
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0
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4.4k
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Comment: C: Bowtie alignment after adapter removal with trimmomatic
8.5 years ago by colin.kern ★ 1.1k
0
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0
replies
7.4k
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Comment: C: Difference between Ensembl annotation GTF and GFF3 files
8.8 years ago by colin.kern ★ 1.1k
0
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1
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7.4k
views
Comment: C: Difference between Ensembl annotation GTF and GFF3 files
8.8 years ago by colin.kern ★ 1.1k
54 results • Page 1 of 2
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