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1.6k
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Answer:
A: TCGAbiolinks problem downloading ASCAT2 data
3.9 years ago by
bruce.moran
▴ 960
2
votes
1
reply
1.7k
views
Answer:
A: TCGA biolinks: peripheral blood healthy control
4.0 years ago by
bruce.moran
▴ 960
0
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1
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1.7k
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Answer:
A: Custom matrix building using R from a datafram
4.0 years ago by
bruce.moran
▴ 960
2
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3.7k
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Answer:
A: quality check of bam files
4.0 years ago by
bruce.moran
▴ 960
2
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0
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926
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Answer:
A: SNP calling specific genes with GATK
4.0 years ago by
bruce.moran
▴ 960
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1
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2.3k
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Answer:
A: Discrepancy in number of pseudoaligned reads for read quantification with Kallis
4.0 years ago by
bruce.moran
▴ 960
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0
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1.1k
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Answer:
A: How to get basic statistics on WES data
4.1 years ago by
bruce.moran
▴ 960
1
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0
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902
views
Answer:
A: Different NGS runs for paired samples
4.1 years ago by
bruce.moran
▴ 960
3
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2
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1.1k
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Answer:
A: Reformat my txt file
4.1 years ago by
bruce.moran
▴ 960
3
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1
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1.1k
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Answer:
A: what does ./1 in a VCF file means
4.1 years ago by
bruce.moran
▴ 960
1
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1
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2.3k
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Answer:
A: Recommendations for Whole Genome Sequencing Workflow
4.2 years ago by
bruce.moran
▴ 960
2
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0
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1.6k
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Answer:
A: How to find those files name which contains specific symbol i.e. underscore sign
4.7 years ago by
bruce.moran
▴ 960
3
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1
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1.5k
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Answer:
C: Post-filtering WES for mutation calling
5.1 years ago by
bruce.moran
▴ 960
3
votes
1
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15k
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Answer:
C: How to calculate Tumor Mutation Burden (TMB) for TCGA samples
5.1 years ago by
bruce.moran
▴ 960
2
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2
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2.5k
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Answer:
A: Microsatellite Instability, Whole exome sequencing
5.1 years ago by
bruce.moran
▴ 960
1
vote
1
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5.0k
views
Answer:
A: low unique mapping ratio of RNA-seq data
5.2 years ago by
bruce.moran
▴ 960
5
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1
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7.0k
views
Answer:
A: Remove duplicates in an extremely large text file
5.2 years ago by
bruce.moran
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2
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0
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1.4k
views
Answer:
A: Where can I find public Single Cell RNA-seq Gene Expression data from Ovarian ca
5.2 years ago by
bruce.moran
▴ 960
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3.3k
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Answer:
A: Sleuth PCA plots - how to change axis to percentage?
5.9 years ago by
bruce.moran
▴ 960
0
votes
0
replies
15k
views
Answer:
A: duplicate 'row.names' are not allowed
5.9 years ago by
bruce.moran
▴ 960
1
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0
replies
3.6k
views
Answer:
A: CNA vs mRNA Expression level
6.4 years ago by
bruce.moran
▴ 960
5
votes
1
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13k
views
Answer:
A: Dealing with multimapping reads in featureCounts
6.6 years ago by
bruce.moran
▴ 960
3
votes
1
reply
3.0k
views
Answer:
A: Pipe BBMap reformat output into SAMtools
6.8 years ago by
bruce.moran
▴ 960
1
vote
0
replies
3.1k
views
Answer:
A: In FACETS, what does the mafR value represent?
6.8 years ago by
bruce.moran
▴ 960
5
votes
2
replies
7.2k
views
Answer:
A: Isolating reads from specific region from bam file
7.1 years ago by
bruce.moran
▴ 960
0
votes
0
replies
2.3k
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Answer:
A: survival analysis using R
7.3 years ago by
bruce.moran
▴ 960
0
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0
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1.5k
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Answer:
A: Anyone familiar with proggene risk analysis?
7.3 years ago by
bruce.moran
▴ 960
1
vote
0
replies
2.8k
views
Answer:
A: How to sequentially replace a string with numerical value?
7.3 years ago by
bruce.moran
▴ 960
0
votes
0
replies
2.7k
views
Answer:
A: deseq dataset from star
7.3 years ago by
bruce.moran
▴ 960
0
votes
1
reply
5.2k
views
Answer:
A: Rna seq extracting read counts from BAM file - noob question
7.3 years ago by
bruce.moran
▴ 960
3
votes
1
reply
3.1k
views
Answer:
A: Plot heatmap using pheatmap library
7.3 years ago by
bruce.moran
▴ 960
0
votes
1
reply
2.1k
views
Answer:
A: FastQC on rna-seq data
7.9 years ago by
bruce.moran
▴ 960
1
vote
0
replies
2.6k
views
Answer:
A: Can I run VEP on a VCF twice?
8.5 years ago by
bruce.moran
▴ 960
2
votes
0
replies
3.2k
views
Answer:
A: Picard-tools mark duplicates error, missing @RG
8.9 years ago by
bruce.moran
▴ 960
1
vote
0
replies
2.4k
views
Answer:
A: copy number profiling from shallow sequenzing or whole genome low coverage seq f
9.0 years ago by
bruce.moran
▴ 960
2
votes
1
reply
25k
views
Answer:
Answer: TCGA RNA-Seq Data: RSEM and RPKM
updated 3.0 years ago by
Ram
43k • written 9.2 years ago by
bruce.moran
▴ 960
0
votes
0
replies
2.2k
views
Answer:
A: AnnotationDBi for NMF Subtyping of RNAseq
9.2 years ago by
bruce.moran
▴ 960
0
votes
0
replies
8.6k
views
Answer:
Answer: How to Generate GO annotation from list of genes
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
bruce.moran
▴ 960
1
vote
0
replies
3.0k
views
Answer:
A: Rna-Seq : How To Check For Very High Coverage Region
10.9 years ago by
bruce.moran
▴ 960
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