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Answer:
Answer: how to specify a specific conda environment in a specific rule with snakemake?
18 months ago by
dariober
14k
1
vote
0
replies
633
views
Answer:
Answer: Comparing groups with makeContrast in edgeR
18 months ago by
dariober
14k
2
votes
0
replies
596
views
Answer:
Answer: How to extract min and max values of a gene from different columns
18 months ago by
dariober
14k
0
votes
1
reply
780
views
Comment:
Comment: Loop for Slurm in python
18 months ago by
dariober
14k
2
votes
0
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901
views
Answer:
Answer: SnakeMake: MissingRuleException
18 months ago by
dariober
14k
2
votes
3
replies
5.6k
views
Comment:
Comment: How can I learn create a bioinformatic pipeline?
18 months ago by
dariober
14k
0
votes
1
reply
2.3k
views
Comment:
Comment: bash program with two subprograms. How to use getopts in all of them?
18 months ago by
dariober
14k
0
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1
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2.3k
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Comment:
Comment: bash program with two subprograms. How to use getopts in all of them?
18 months ago by
dariober
14k
0
votes
1
reply
1.0k
views
Comment:
Comment: Can I perform DE analysis with Seurat if I only have one sample per condition?
18 months ago by
dariober
14k
0
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1
reply
2.3k
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Comment:
Comment: bash program with two subprograms. How to use getopts in all of them?
18 months ago by
dariober
14k
1
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0
replies
887
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Comment:
Comment: R Find which gene a SNP position is in
18 months ago by
dariober
14k
0
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1
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2.3k
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Comment:
Comment: bash program with two subprograms. How to use getopts in all of them?
18 months ago by
dariober
14k
4
votes
1
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595
views
Answer:
Answer: How to calculate effect size between two gene sets?
19 months ago by
dariober
14k
1
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0
replies
604
views
Comment:
Comment: Running several rounds of the same rule in Snakemake
19 months ago by
dariober
14k
1
vote
3
replies
1.1k
views
How ensembl assigns parent GO terms and its consequence on GO analysis
gsea
ensembl
fgsea
biomart
go
updated 19 months ago by
geneontologyhelp
▴ 400 • written 19 months ago by
dariober
14k
0
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0
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1.1k
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Comment:
Comment: How ensembl assigns parent GO terms and its consequence on GO analysis
19 months ago by
dariober
14k
2
votes
1
reply
1.9k
views
Answer:
Answer: Can we use UMAP clustering on bulk data?
19 months ago by
dariober
14k
2
votes
0
replies
966
views
Answer:
Answer: Remove NA from file while reading
19 months ago by
dariober
14k
1
vote
1
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559
views
Answer:
Answer: CNA calling in mouse tumor-normal WGS
20 months ago by
dariober
14k
3
votes
2
replies
1.7k
views
Answer:
Answer: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
20 months ago by
dariober
14k
0
votes
1
reply
2.3k
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Comment:
Comment: augustus installation with conda
20 months ago by
dariober
14k
15
votes
1
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4.0k
views
Tutorial:
Dealing with nanopore fast5 files compressed with vbz
hdf5
nanopore
fast5
vbz
MinKNOW
updated 20 months ago by
Assa Yeroslaviz
★ 1.8k • written 2.3 years ago by
dariober
14k
2
votes
0
replies
1.8k
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Comment:
Comment: r script is not working in snakemake
20 months ago by
dariober
14k
0
votes
0
replies
1.2k
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Comment:
Comment: Fasta file is not converting properly to Indexed Fasta File
21 months ago by
dariober
14k
0
votes
0
replies
1.0k
views
Comment:
Comment: CWL and Arvados
21 months ago by
dariober
14k
1
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1
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842
views
Answer:
Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by
dariober
14k
0
votes
1
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681
views
Comment:
Comment: OrthomclLoadBlast: I am not getting the log file or SimilarSequences table.
21 months ago by
dariober
14k
2
votes
0
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2.8k
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Answer:
Answer: Write SAM file manually with pysam
22 months ago by
dariober
14k
1
vote
1
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1.6k
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Comment:
Comment: How can I biuld to pipeline in nextflow to download SRA files?
22 months ago by
dariober
14k
1
vote
1
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1.6k
views
Answer:
Answer: How can I biuld to pipeline in nextflow to download SRA files?
22 months ago by
dariober
14k
1
vote
0
replies
789
views
Answer:
Answer: Rapid lookup of barcodes
22 months ago by
dariober
14k
1
vote
1
reply
1.4k
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blast: error while reading seqid using ncbi database
ncbi
blast
22 months ago by
dariober
14k
1
vote
0
replies
1.4k
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Answer:
Answer: blast: error while reading seqid using ncbi database
22 months ago by
dariober
14k
1
vote
0
replies
624
views
Comment:
Comment: Snakemake MissingExceptionOutput
22 months ago by
dariober
14k
1
vote
1
reply
5.4k
views
Comment:
Comment: fgsea after deseq2, criteria for ranking DEGs.
23 months ago by
dariober
14k
1
vote
0
replies
4.0k
views
Answer:
Answer: How to parallelise a for loop in bash?
23 months ago by
dariober
14k
3
votes
1
reply
1.4k
views
Comment:
Comment: How to make ortholog table
23 months ago by
dariober
14k
1
vote
0
replies
1.0k
views
Comment:
Comment: Is there a way to expand RAM or CPU?
23 months ago by
dariober
14k
0
votes
1
reply
1.9k
views
Comment:
Comment: snakemake error - one of the commands exited with non-zero exit code
24 months ago by
dariober
14k
0
votes
1
reply
1.9k
views
Answer:
Answer: snakemake error - one of the commands exited with non-zero exit code
24 months ago by
dariober
14k
0
votes
1
reply
1.4k
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Answer:
Answer: Issue with trend line and confidence interval
24 months ago by
dariober
14k
0
votes
1
reply
658
views
Comment:
Comment: Inference of 5hmC levels from BS-seq and oxBS-seq data
2.0 years ago by
dariober
14k
2
votes
1
reply
1.6k
views
Answer:
Answer: snakemake workflow
2.0 years ago by
dariober
14k
1
vote
1
reply
1.7k
views
Comment:
Comment: Running bash script from PATH automatically logging into the server
2.0 years ago by
dariober
14k
1
vote
1
reply
1.7k
views
Comment:
Comment: Running bash script from PATH automatically logging into the server
2.0 years ago by
dariober
14k
2
votes
1
reply
1.7k
views
Answer:
Answer: Running bash script from PATH automatically logging into the server
2.0 years ago by
dariober
14k
1
vote
0
replies
12k
views
Comment:
Comment: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
2.0 years ago by
dariober
14k
0
votes
0
replies
20k
views
Comment:
Comment: Filtration Of Reads With Length Lower Than 30 From Bam
2.0 years ago by
dariober
14k
1
vote
1
reply
2.1k
views
Comment:
Comment: fastp snakemake
2.0 years ago by
dariober
14k
1
vote
2
replies
2.1k
views
Answer:
Answer: fastp snakemake
2.0 years ago by
dariober
14k
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